Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JGR68_RS00910 Genome accession   NZ_CP067113
Coordinates   189502..191010 (-) Length   502 a.a.
NCBI ID   WP_199362958.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 184502..196010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS00895 (JGR68_00895) - 185237..186199 (-) 963 WP_199362961.1 LysR family transcriptional regulator -
  JGR68_RS00900 (JGR68_00900) aceB 186314..187930 (+) 1617 WP_199362960.1 malate synthase A -
  JGR68_RS00905 (JGR68_00905) aceA 188161..189453 (+) 1293 WP_199362959.1 isocitrate lyase -
  JGR68_RS00910 (JGR68_00910) comM 189502..191010 (-) 1509 WP_199362958.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JGR68_RS00915 (JGR68_00915) - 191021..191320 (-) 300 WP_199362957.1 accessory factor UbiK family protein -
  JGR68_RS00920 (JGR68_00920) - 191465..191803 (+) 339 WP_199362956.1 P-II family nitrogen regulator -
  JGR68_RS00925 (JGR68_00925) speE 191929..192777 (-) 849 WP_199362955.1 polyamine aminopropyltransferase -
  JGR68_RS00930 (JGR68_00930) speA 193025..194914 (+) 1890 WP_199362954.1 arginine decarboxylase -
  JGR68_RS00935 (JGR68_00935) - 195053..195520 (-) 468 WP_199363377.1 DMT family transporter -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 52425.00 Da        Isoelectric Point: 8.4331

>NTDB_id=525105 JGR68_RS00910 WP_199362958.1 189502..191010(-) (comM) [Luteimonas sp. MC1750]
MAGLAIVHGRARAGVRAPEVTVEVYMSGGLPRMSMVGLPQAAVRESKDRVRAAIRCAQYEFPPRVTTVNLAPADLPKGGG
RFDLPIALGILAASDQLPQAALAGHEFMGELGLAGELRAVDGVLPAALACGEAGRVLVVPVGNGAEAALARGVDVRVART
LSEVCAHLTGQRVLPRAAADPGGRTGATGSPDLADVRGQLRARRALEIAASGGHHLLLSGSPGCGKTLLASRLPGILPEA
SEAEALETAAIASISGRGIDPARWRQRPFRAPHHTASAIALVGGSGEPRPGEISLAHNGVLFLDELPEWSRSVLEVLREP
LESGTVTVSRAARQSEFPARFQLVAAMNPCPCGWAGDPSGRCQCSLDAVQRYRMRVSGPLLDRIDLHVDVPRMSPAELRP
DAPAGEASAAVRARVEAARGRQLARAGVLNAHLDQAGTAAHCRLADGDQALLERAIDSLQLSARAMHRILRVARTIADLD
GRDAIGSAHLAEALGYRGFVAQ

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=525105 JGR68_RS00910 WP_199362958.1 189502..191010(-) (comM) [Luteimonas sp. MC1750]
ATGGCGGGGCTCGCGATCGTGCACGGCCGTGCACGCGCCGGCGTGCGCGCGCCGGAAGTGACGGTCGAGGTCTACATGAG
CGGCGGACTGCCGCGCATGTCGATGGTCGGGCTGCCGCAGGCCGCGGTGCGCGAGTCCAAGGACCGGGTGCGCGCCGCGA
TCCGCTGCGCCCAGTACGAATTCCCGCCGCGCGTGACCACGGTGAACCTGGCGCCGGCCGACCTGCCCAAGGGCGGCGGC
CGTTTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCCAGTGACCAGCTGCCGCAGGCGGCGCTTGCCGGCCACGAGTT
CATGGGCGAGCTCGGCCTGGCCGGGGAGCTGCGCGCGGTCGACGGTGTGCTGCCGGCTGCGCTGGCCTGCGGCGAGGCCG
GTCGCGTACTGGTGGTGCCTGTCGGCAACGGGGCCGAGGCGGCACTGGCACGCGGCGTCGACGTGCGCGTGGCCCGTACG
CTGTCGGAGGTGTGCGCGCATCTCACCGGACAGCGCGTCCTGCCGCGGGCCGCGGCCGATCCGGGAGGCAGGACGGGCGC
GACCGGCAGCCCGGACCTCGCCGACGTGCGCGGCCAGCTGCGCGCGCGACGGGCACTGGAGATCGCCGCCAGCGGCGGAC
ACCACCTGCTGCTGAGCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCC
AGCGAGGCCGAAGCACTGGAGACCGCCGCGATCGCCTCGATCAGCGGCCGCGGCATCGACCCGGCTCGCTGGCGGCAGCG
GCCGTTCCGCGCCCCGCACCACACGGCCAGCGCCATCGCCCTGGTGGGCGGCAGCGGCGAGCCGCGTCCGGGCGAGATCT
CGCTGGCGCACAACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTGGAGCAGGAGCGTCCTCGAAGTGCTGCGCGAGCCG
CTGGAGTCGGGCACGGTCACGGTCTCGCGCGCCGCGCGGCAGAGCGAGTTCCCGGCGCGCTTCCAGCTCGTCGCGGCGAT
GAATCCGTGTCCCTGCGGCTGGGCGGGCGATCCCTCGGGCCGCTGCCAATGCAGCCTCGACGCCGTGCAGCGCTACCGCA
TGCGCGTGTCCGGCCCGCTGCTCGACCGCATCGACCTGCACGTCGACGTTCCGCGCATGTCGCCCGCGGAGCTGCGGCCG
GATGCGCCGGCCGGCGAGGCCAGCGCGGCCGTGCGGGCCCGAGTCGAGGCCGCGCGCGGACGACAGCTCGCGCGTGCAGG
CGTGCTCAATGCGCACCTCGACCAGGCCGGTACCGCCGCGCATTGCCGCCTGGCGGACGGCGACCAGGCGTTGCTGGAGC
GCGCGATCGACAGCCTGCAGCTGTCGGCCCGCGCCATGCATCGGATCCTGCGCGTCGCGCGCACGATCGCCGACCTCGAT
GGCCGCGACGCCATCGGCAGCGCGCACCTGGCCGAGGCCCTCGGCTATCGCGGCTTCGTCGCGCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(22-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.326

99.004

0.538
  comM Vibrio campbellii strain DS40M4

53.521

99.004

0.53
  comM Haemophilus influenzae Rd KW20

51.8

99.602

0.516
  comM Legionella pneumophila str. Paris

50.605

98.805

0.5
  comM Legionella pneumophila strain ERS1305867

50.605

98.805

0.5
  comM Glaesserella parasuis strain SC1401

49.801

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.762

100

0.44