Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JIO00_RS28665 Genome accession   NZ_CP067098
Coordinates   6301042..6302535 (+) Length   497 a.a.
NCBI ID   WP_102595399.1    Uniprot ID   -
Organism   Pseudomonas sp. SW-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6296042..6307535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS28630 (JIO00_28630) sutA 6296068..6296391 (-) 324 WP_010465107.1 transcriptional regulator SutA -
  JIO00_RS28635 (JIO00_28635) - 6296493..6296918 (-) 426 WP_008030499.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JIO00_RS28640 (JIO00_28640) - 6297133..6298470 (-) 1338 WP_010465110.1 ammonium transporter -
  JIO00_RS28645 (JIO00_28645) glnK 6298508..6298846 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  JIO00_RS28650 (JIO00_28650) - 6299264..6299524 (+) 261 WP_010465113.1 accessory factor UbiK family protein -
  JIO00_RS28655 (JIO00_28655) - 6299945..6300472 (+) 528 WP_200667282.1 Bro-N domain-containing protein -
  JIO00_RS28660 (JIO00_28660) - 6300469..6300747 (-) 279 WP_042932484.1 HigA family addiction module antitoxin -
  JIO00_RS28665 (JIO00_28665) comM 6301042..6302535 (+) 1494 WP_102595399.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JIO00_RS28670 (JIO00_28670) - 6302593..6303171 (+) 579 WP_200667283.1 hypothetical protein -
  JIO00_RS28675 (JIO00_28675) - 6303158..6303460 (+) 303 WP_010465122.1 hypothetical protein -
  JIO00_RS28680 (JIO00_28680) - 6303513..6304724 (-) 1212 WP_200667284.1 aldose 1-epimerase family protein -
  JIO00_RS28685 (JIO00_28685) - 6304991..6306373 (+) 1383 WP_102595401.1 SrfA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52947.01 Da        Isoelectric Point: 7.8724

>NTDB_id=525041 JIO00_RS28665 WP_102595399.1 6301042..6302535(+) (comM) [Pseudomonas sp. SW-3]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDIECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LQAVAHLNGHTPIEPFVSDGLLYASMPYPDLNEVQGQMSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVSSCVPLSHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPSQKP
GDDTATAAALVADARERQNKRQGCANAFLDLPGLRKHCKLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=525041 JIO00_RS28665 WP_102595399.1 6301042..6302535(+) (comM) [Pseudomonas sp. SW-3]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTTACCGTAGAAGTCCACTTGGCCAA
CGGTTTGCCGTCCCTGACGATGGTCGGATTGCCCGAAGCGGCAGTAAAGGAAAGCAAGGACCGGGTACGCAGCGCGATTA
TCAATTCAGGGCTGCAATTCCCGGCACGGCGTATCACGTTGAATCTCGCTCCCGCTGACCTACCGAAGGACGGTGGACGA
TTTGATCTGGCCATTGCGCTGGGGATTCTGTCAGCCAGCGTGCAGGTGCCGACGTTGACGCTGGATGACATTGAGTGTCT
GGGAGAGTTGGCGCTATCGGGTGCGGTGAGGGCAGTTCGCGGTGTGCTGCCGGCAGCATTAGCAGCACGCAAGGCCGGGC
GGACGCTGGTAGTGCCGCGGGCAAATGCAGAAGAAGCGTGTCTGGCGTCGGGGTTGAAGGTGATCGCGGTGGATCATTTG
CTTCAGGCGGTGGCGCACCTTAATGGACACACTCCAATCGAGCCCTTCGTATCCGATGGCTTGCTGTACGCCAGCATGCC
GTACCCCGATTTGAATGAGGTGCAAGGTCAAATGTCAGCCAAGCGCGCGCTGCTGATAGCGGCGGCAGGTGCGCATAACT
TGTTGTTCAGCGGTCCGCCGGGAACAGGGAAAACCCTGCTGGCCAGTCGTTTACCGGGGCTGCTACCGCCATTGGCTGAG
AATGAAGCGCTTGAGGTCGCAGCAATTCAATCGGTTTCCAGTTGCGTGCCGCTGAGCCATTGGCCGCAACGACCGTTTCG
CCAACCTCACCATTCCGCATCAGGCCCGGCACTGGTCGGCGGCGGCTCACGACCACAACCCGGCGAAATCACCCTCGCCC
ATCATGGCGTGCTGTTCCTGGACGAACTTCCTGAATTTGATCGCAAGGTATTGGAGGTTTTGAGAGAGCCTCTGGAATCC
GGCCACATCGTGATATCCCGCGCCAAGGACCGCGTGCGCTTCCCGGCGCGATTCCAATTGGTGGCAGCAATGAATCCATG
TCCCTGTGGATATCTTGGTGAACCGAGTGGTCGCTGCTCCTGTACGCCGGACATGGTCCAGCGCTACCGAAACAAACTGT
CGGGGCCGCTGCTGGATCGCATTGACCTGCACCTGACCGTCGCCCGAGAAGCCACCGCATTAAACCCATCACAGAAACCC
GGTGACGATACAGCCACCGCTGCGGCACTGGTCGCCGACGCAAGAGAGCGTCAAAACAAGCGCCAAGGCTGCGCCAATGC
ATTCCTCGATCTGCCTGGCCTGCGCAAACACTGCAAGTTATCCACAGCCGATGAAAACTGGCTGGAATCCGCGTGTGAAC
GACTGACCTTGTCGCTCAGAGCTGCTCACCGATTGCTCAAGGTCGCCCGCACCTTGGCGGATCTTGAGCAGGTCGATGGG
ATCACCCGCGAGCATTTGGCAGAAGCGCTGCAATACCGACCGGCCTCAGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Vibrio campbellii strain DS40M4

54.949

99.598

0.547
  comM Glaesserella parasuis strain SC1401

53.707

100

0.539
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

100

0.453