Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5O18_RS00865 Genome accession   NZ_CP081939
Coordinates   178632..179147 (+) Length   171 a.a.
NCBI ID   WP_017805689.1    Uniprot ID   A0A0F5F0Y4
Organism   Avibacterium paragallinarum strain p4chr1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 173632..184147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS00855 (K5O18_00855) - 174434..175480 (-) 1047 WP_017805687.1 rod shape-determining protein -
  K5O18_RS00860 (K5O18_00860) uvrA 175626..178454 (-) 2829 WP_194743012.1 excinuclease ABC subunit UvrA Machinery gene
  K5O18_RS00865 (K5O18_00865) ssb 178632..179147 (+) 516 WP_017805689.1 single-stranded DNA-binding protein Machinery gene
  K5O18_RS00870 (K5O18_00870) - 179310..180383 (-) 1074 WP_110479356.1 alpha/beta hydrolase -
  K5O18_RS00875 (K5O18_00875) - 180766..182091 (+) 1326 WP_222593715.1 ATP-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19127.00 Da        Isoelectric Point: 5.0012

>NTDB_id=524693 K5O18_RS00865 WP_017805689.1 178632..179147(+) (ssb) [Avibacterium paragallinarum strain p4chr1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRGQGGYSAQGGYAQQGSNQYAQPAQPSYQAPQQQAAARPSSPPTPMV
DDNFDDDNIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=524693 K5O18_RS00865 WP_017805689.1 178632..179147(+) (ssb) [Avibacterium paragallinarum strain p4chr1]
ATGGCTGGAGTAAATAAAGTTATTATTGTTGGAAATCTAGGAAATGATCCGGAAATTCGTACAATGCCAAATGGGGAAGC
CGTTGCGAACATTAGTGTTGCGACCAGTGAAAGCTGGATGGATAAAAATACGGGAGAACGCCGTGAAATTACCGAATGGC
ATCGTATTGTGTTTTATCGTCGCCAAGCAGAAGTCGCTGGCGAATATTTACGCAAAGGCTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACTCGCAAATGGCAAGATCAAAATGGCCAAGATCGTTATACAACAGAAATTCAAGGCGATGTTTTGCAAAT
GTTAGATAGCCGTGCAGATAGAGGACAAGGTGGGTATTCAGCTCAAGGGGGATATGCTCAACAAGGCAGCAACCAATATG
CACAACCCGCACAACCGAGCTATCAAGCCCCTCAACAACAGGCAGCAGCCCGCCCTTCATCACCACCTACTCCTATGGTT
GATGATAATTTTGATGACGATAATATCCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5F0Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.132

100

0.725
  ssb Vibrio cholerae strain A1552

60.221

100

0.637
  ssb Neisseria meningitidis MC58

48

100

0.491
  ssb Neisseria gonorrhoeae MS11

48

100

0.491