Detailed information NTG0524126

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH287_RS21155
• Genome accession: NZ_CP067001
• Coordinates: 4872879..4874399 (-)
• Length: 506 a.a.
• NCBI ID: WP_116670835.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 40-2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4867879..4879399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH287_RS21135 (JH287_21105)	-	4868103..4869224 (+)	1122	WP_274496802.1	acyl-CoA desaturase	-
JH287_RS21140 (JH287_21110)	-	4869885..4871444 (-)	1560	WP_274399371.1	EAL domain-containing protein	-
JH287_RS21145 (JH287_21115)	-	4871826..4872002 (+)	177	WP_012439469.1	hypothetical protein	-
JH287_RS21150 (JH287_21120)	-	4872013..4872522 (-)	510	WP_019238055.1	lipocalin family protein	-
JH287_RS21155 (JH287_21125)	comM	4872879..4874399 (-)	1521	WP_116670835.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH287_RS21160 (JH287_21130)	-	4874415..4874687 (-)	273	WP_040941985.1	accessory factor UbiK family protein	-
JH287_RS21165 (JH287_21135)	-	4874842..4875216 (+)	375	WP_029217016.1	P-II family nitrogen regulator	-
JH287_RS21170 (JH287_21140)	-	4875505..4876164 (-)	660	WP_162808696.1	RIO1 family regulatory kinase/ATPase	-
JH287_RS21175 (JH287_21145)	-	4876693..4877475 (+)	783	WP_011038945.1	hypothetical protein	-
JH287_RS21180 (JH287_21150)	speE	4877590..4878447 (-)	858	WP_011038944.1	polyamine aminopropyltransferase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53855.54 Da
• Isoelectric Point: 8.3405

>NTDB_id=524126 JH287_RS21155 WP_116670835.1 4872879..4874399(-) (comM) [Xanthomonas campestris pv. campestris strain 40-2]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=524126 JH287_RS21155 WP_116670835.1 4872879..4874399(-) (comM) [Xanthomonas campestris pv. campestris strain 40-2]
ATGAGTCTGGCACTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGTTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTACCCAGTCTATTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCACCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAACTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCACTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.336	100	0.553
comM	Haemophilus influenzae Rd KW20	54.118	100	0.545
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Glaesserella parasuis strain SC1401	54.15	100	0.542
comM	Legionella pneumophila str. Paris	53.094	99.012	0.526
comM	Legionella pneumophila strain ERS1305867	53.094	99.012	0.526
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.462