Detailed information NTG0524073

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH288_RS20020
• Genome accession: NZ_CP066997
• Coordinates: 4582969..4584489 (+)
• Length: 506 a.a.
• NCBI ID: WP_116670835.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 33-1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4577969..4589489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH288_RS19995 (JH288_19965)	speE	4578876..4579733 (+)	858	WP_011038944.1	polyamine aminopropyltransferase	-
JH288_RS20000 (JH288_19970)	-	4579848..4580630 (-)	783	WP_116670836.1	hypothetical protein	-
JH288_RS20005 (JH288_19975)	-	4581169..4581828 (+)	660	WP_050911776.1	RIO1 family regulatory kinase/ATPase	-
JH288_RS20010 (JH288_19980)	-	4582151..4582525 (-)	375	WP_200900803.1	P-II family nitrogen regulator	-
JH288_RS20015 (JH288_19985)	-	4582680..4582952 (+)	273	WP_011038948.1	accessory factor UbiK family protein	-
JH288_RS20020 (JH288_19990)	comM	4582969..4584489 (+)	1521	WP_116670835.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH288_RS20025 (JH288_19995)	-	4584847..4585356 (+)	510	WP_016944613.1	lipocalin family protein	-
JH288_RS20030 (JH288_20000)	-	4585367..4585543 (-)	177	WP_012439469.1	hypothetical protein	-
JH288_RS20035 (JH288_20005)	-	4585925..4587484 (+)	1560	WP_012439470.1	EAL domain-containing protein	-
JH288_RS20040 (JH288_20010)	-	4587905..4588075 (-)	171	WP_158070205.1	hypothetical protein	-
JH288_RS20045 (JH288_20015)	-	4588089..4589210 (-)	1122	WP_042595610.1	acyl-CoA desaturase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53855.54 Da
• Isoelectric Point: 8.3405

>NTDB_id=524073 JH288_RS20020 WP_116670835.1 4582969..4584489(+) (comM) [Xanthomonas campestris pv. campestris strain 33-1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=524073 JH288_RS20020 WP_116670835.1 4582969..4584489(+) (comM) [Xanthomonas campestris pv. campestris strain 33-1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGTTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTACCCAGTCTATTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCACCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAACTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCACTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTAGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.336	100	0.553
comM	Haemophilus influenzae Rd KW20	54.118	100	0.545
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Glaesserella parasuis strain SC1401	54.15	100	0.542
comM	Legionella pneumophila str. Paris	53.094	99.012	0.526
comM	Legionella pneumophila strain ERS1305867	53.094	99.012	0.526
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.462