Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | JH288_RS05690 | Genome accession | NZ_CP066997 |
| Coordinates | 1338665..1340371 (+) | Length | 568 a.a. |
| NCBI ID | WP_274510266.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 33-1 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 1337237..1338369 | 1338665..1340371 | flank | 296 |
Gene organization within MGE regions
Location: 1337237..1340371
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH288_RS05690 (JH288_05665) | pilB | 1338665..1340371 (+) | 1707 | WP_274510266.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 61958.12 Da Isoelectric Point: 5.6058
>NTDB_id=524060 JH288_RS05690 WP_274510266.1 1338665..1340371(+) (pilB) [Xanthomonas campestris pv. campestris strain 33-1]
MGITGIARRLVQDGVLDEGSARAAMDQAALAKVPLPQWFAEKKLVSAAQLAAANAIEFGMPLMDVSVFDVNQNAVKLVSE
ELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQAGNASFGSVLGGDDEEMGDL
DVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQRIAA
RLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKLFLDAIHKP
YGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPEHALLAEGF
TQEQVANIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKASHGVTSLA
EINRVTKD
MGITGIARRLVQDGVLDEGSARAAMDQAALAKVPLPQWFAEKKLVSAAQLAAANAIEFGMPLMDVSVFDVNQNAVKLVSE
ELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQAGNASFGSVLGGDDEEMGDL
DVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQRIAA
RLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKLFLDAIHKP
YGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPEHALLAEGF
TQEQVANIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKASHGVTSLA
EINRVTKD
Nucleotide
Download Length: 1707 bp
>NTDB_id=524060 JH288_RS05690 WP_274510266.1 1338665..1340371(+) (pilB) [Xanthomonas campestris pv. campestris strain 33-1]
GTGGGTATCACAGGAATAGCACGGCGTTTGGTTCAAGACGGCGTACTTGATGAAGGGAGCGCTCGCGCTGCGATGGATCA
GGCAGCATTGGCGAAAGTGCCGCTTCCTCAGTGGTTCGCGGAAAAGAAGCTTGTGTCAGCTGCTCAACTCGCAGCTGCTA
ACGCAATCGAGTTTGGCATGCCGTTGATGGACGTGTCTGTTTTCGACGTCAACCAGAACGCAGTCAAGCTGGTCAGTGAG
GAGTTGCTTCAGAAATACCAGGTGCTGCCGCTGTTCAAGCGCGGCAATCGGTTGTTCGTGGGGGTGAGCAACCCGACCCA
GACGCGTGCGCTGGACGACATCAAGTTCCACACCAATCTGGTTGTCGAGCCGATTTTGGTCGATGAAGATCAGATCCGTA
GGACGTTGGAGCAATGGCAGGCAGGAAACGCGTCCTTTGGCTCGGTGCTTGGTGGCGACGACGAGGAGATGGGGGACCTA
GACGTGTCCGCCGGGGACGAGGACATGGGCGCCGGTGGGGATTCCGGGGTCGATGCCAAGGGCGATGACACGCCGGTGGT
GAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGATATCCACTTCGAGCCGTATGAAGACGACT
ACCGTGTGCGGTTGCGGATCGATGGGTTGTTGAAGAACGTAGCCAAGGCGCCGGTGAAGCTCAACCAGCGCATCGCGGCG
CGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAACTCAACCTGTCCAA
GACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCGACCTTGTTCGGCGAGAAGGTGGTGCTGCGTATCCTGGACGCCA
GTGCGGCCAAGCTCGGTATCGAGAAGCTGGGTTACGAGGCGGATCAGCAGAAGCTGTTCCTGGATGCGATCCACAAGCCC
TACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTATACCGCGCTCGGGATTCTCAACGA
CGAGACGCGCAATATTTCCACGGCCGAGGATCCGGTCGAAATCCGCCTGCCTGGCGTCAATCAGGTGCAGCAGAACGTCA
AGCGGGGCATGACGTTTGCCGCTGCGCTGCGCTCTTTCCTGCGTCAGGACCCGGACATCATCATGGTCGGCGAAATCCGC
GACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACATGGTGCTGTCGACGCTGCACACCAACGATGC
GCCGCAAACCATTGCGCGTCTGATGAACATGGGTATCGCGCCGTACAACATTACCTCATCGGTGACCCTGGTCATCGCGC
AGCGCCTGGCGCGGCGGCTGTGCAACAACTGTAAGCGCAAGTCGACGCTGCCGGAACATGCGCTGCTGGCGGAAGGCTTT
ACGCAGGAGCAGGTTGCGAACATCGAGCTCTATGAGGCGGTCGGTTGCGATGAATGCACGGAAGGCTACAAGGGCCGCAC
CGGTATCTATCAGGTGATGCCGATGACCGATGAAATCGGCGCGATCGTGCTGGAAGGCGGCAATGCGATGCAGATCGCCG
AGGCCGCGCAGAAGATCGGTATCCGCGACCTGCGCCAGTCGGCGTTGATGAAGGCTTCGCACGGGGTGACCAGCCTGGCT
GAGATCAATCGGGTGACCAAGGACTGA
GTGGGTATCACAGGAATAGCACGGCGTTTGGTTCAAGACGGCGTACTTGATGAAGGGAGCGCTCGCGCTGCGATGGATCA
GGCAGCATTGGCGAAAGTGCCGCTTCCTCAGTGGTTCGCGGAAAAGAAGCTTGTGTCAGCTGCTCAACTCGCAGCTGCTA
ACGCAATCGAGTTTGGCATGCCGTTGATGGACGTGTCTGTTTTCGACGTCAACCAGAACGCAGTCAAGCTGGTCAGTGAG
GAGTTGCTTCAGAAATACCAGGTGCTGCCGCTGTTCAAGCGCGGCAATCGGTTGTTCGTGGGGGTGAGCAACCCGACCCA
GACGCGTGCGCTGGACGACATCAAGTTCCACACCAATCTGGTTGTCGAGCCGATTTTGGTCGATGAAGATCAGATCCGTA
GGACGTTGGAGCAATGGCAGGCAGGAAACGCGTCCTTTGGCTCGGTGCTTGGTGGCGACGACGAGGAGATGGGGGACCTA
GACGTGTCCGCCGGGGACGAGGACATGGGCGCCGGTGGGGATTCCGGGGTCGATGCCAAGGGCGATGACACGCCGGTGGT
GAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGATATCCACTTCGAGCCGTATGAAGACGACT
ACCGTGTGCGGTTGCGGATCGATGGGTTGTTGAAGAACGTAGCCAAGGCGCCGGTGAAGCTCAACCAGCGCATCGCGGCG
CGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAACTCAACCTGTCCAA
GACCAAGCAGATCGACTTCCGTGTGAGCACCTTGCCGACCTTGTTCGGCGAGAAGGTGGTGCTGCGTATCCTGGACGCCA
GTGCGGCCAAGCTCGGTATCGAGAAGCTGGGTTACGAGGCGGATCAGCAGAAGCTGTTCCTGGATGCGATCCACAAGCCC
TACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTATACCGCGCTCGGGATTCTCAACGA
CGAGACGCGCAATATTTCCACGGCCGAGGATCCGGTCGAAATCCGCCTGCCTGGCGTCAATCAGGTGCAGCAGAACGTCA
AGCGGGGCATGACGTTTGCCGCTGCGCTGCGCTCTTTCCTGCGTCAGGACCCGGACATCATCATGGTCGGCGAAATCCGC
GACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACATGGTGCTGTCGACGCTGCACACCAACGATGC
GCCGCAAACCATTGCGCGTCTGATGAACATGGGTATCGCGCCGTACAACATTACCTCATCGGTGACCCTGGTCATCGCGC
AGCGCCTGGCGCGGCGGCTGTGCAACAACTGTAAGCGCAAGTCGACGCTGCCGGAACATGCGCTGCTGGCGGAAGGCTTT
ACGCAGGAGCAGGTTGCGAACATCGAGCTCTATGAGGCGGTCGGTTGCGATGAATGCACGGAAGGCTACAAGGGCCGCAC
CGGTATCTATCAGGTGATGCCGATGACCGATGAAATCGGCGCGATCGTGCTGGAAGGCGGCAATGCGATGCAGATCGCCG
AGGCCGCGCAGAAGATCGGTATCCGCGACCTGCGCCAGTCGGCGTTGATGAAGGCTTCGCACGGGGTGACCAGCCTGGCT
GAGATCAATCGGGTGACCAAGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
55.986 |
100 |
0.56 |
| pilB | Acinetobacter baylyi ADP1 |
55.81 |
100 |
0.558 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.632 |
100 |
0.528 |
| pilB | Vibrio cholerae strain A1552 |
49.209 |
100 |
0.493 |
| pilF | Neisseria gonorrhoeae MS11 |
49.12 |
100 |
0.491 |
| pilB | Vibrio campbellii strain DS40M4 |
45.518 |
100 |
0.456 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
45.745 |
99.296 |
0.454 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.313 |
92.254 |
0.363 |
| pilF | Thermus thermophilus HB27 |
39.499 |
91.373 |
0.361 |