Detailed information NTG0524039

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH297_RS20135
• Genome accession: NZ_CP066995
• Coordinates: 4619365..4620885 (+)
• Length: 506 a.a.
• NCBI ID: WP_040941986.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 33-4
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4614365..4625885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH297_RS20110 (JH297_20045)	speE	4615322..4616179 (+)	858	WP_011038944.1	polyamine aminopropyltransferase	-
JH297_RS20115 (JH297_20050)	-	4616294..4617076 (-)	783	WP_057673499.1	hypothetical protein	-
JH297_RS20120 (JH297_20055)	-	4617614..4618273 (+)	660	WP_274497861.1	RIO1 family regulatory kinase/ATPase	-
JH297_RS20125 (JH297_20060)	-	4618548..4618922 (-)	375	WP_029217016.1	P-II family nitrogen regulator	-
JH297_RS20130 (JH297_20065)	-	4619077..4619349 (+)	273	WP_011038948.1	accessory factor UbiK family protein	-
JH297_RS20135 (JH297_20070)	comM	4619365..4620885 (+)	1521	WP_040941986.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH297_RS20140 (JH297_20075)	-	4621242..4621751 (+)	510	WP_187305902.1	lipocalin family protein	-
JH297_RS20145 (JH297_20080)	-	4621762..4621938 (-)	177	WP_012439469.1	hypothetical protein	-
JH297_RS20150 (JH297_20085)	-	4622320..4623879 (+)	1560	WP_237343136.1	EAL domain-containing protein	-
JH297_RS20155 (JH297_20090)	-	4624334..4624504 (-)	171	WP_274497862.1	hypothetical protein	-
JH297_RS20160 (JH297_20095)	-	4624518..4625639 (-)	1122	WP_011038953.1	acyl-CoA desaturase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53881.58 Da
• Isoelectric Point: 8.3405

>NTDB_id=524039 JH297_RS20135 WP_040941986.1 4619365..4620885(+) (comM) [Xanthomonas campestris pv. campestris strain 33-4]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=524039 JH297_RS20135 WP_040941986.1 4619365..4620885(+) (comM) [Xanthomonas campestris pv. campestris strain 33-4]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTTAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTACTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.336	100	0.553
comM	Haemophilus influenzae Rd KW20	54.118	100	0.545
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Glaesserella parasuis strain SC1401	53.953	100	0.54
comM	Legionella pneumophila str. Paris	53.187	99.209	0.528
comM	Legionella pneumophila strain ERS1305867	53.187	99.209	0.528
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.047	100	0.46