Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH290_RS02045 Genome accession   NZ_CP066978
Coordinates   476873..478393 (-) Length   506 a.a.
NCBI ID   WP_223647338.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 18048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471873..483393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH290_RS02020 (JH290_02020) - 472108..473229 (+) 1122 WP_223647334.1 acyl-CoA desaturase -
  JH290_RS02025 (JH290_02025) - 473243..473413 (+) 171 WP_223647335.1 hypothetical protein -
  JH290_RS02030 (JH290_02030) - 473860..475419 (-) 1560 WP_223647336.1 EAL domain-containing protein -
  JH290_RS02035 (JH290_02035) - 475801..475977 (+) 177 WP_012439469.1 hypothetical protein -
  JH290_RS02040 (JH290_02040) - 475988..476497 (-) 510 WP_223647337.1 lipocalin family protein -
  JH290_RS02045 (JH290_02045) comM 476873..478393 (-) 1521 WP_223647338.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH290_RS02050 (JH290_02050) - 478409..478681 (-) 273 WP_040941985.1 accessory factor UbiK family protein -
  JH290_RS02055 (JH290_02055) - 478836..479210 (+) 375 WP_200900803.1 P-II family nitrogen regulator -
  JH290_RS02060 (JH290_02060) - 479493..480152 (-) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  JH290_RS02065 (JH290_02065) - 480681..481466 (+) 786 WP_223647339.1 hypothetical protein -
  JH290_RS02070 (JH290_02070) speE 481581..482438 (-) 858 WP_011038944.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53786.43 Da        Isoelectric Point: 8.1526

>NTDB_id=523763 JH290_RS02045 WP_223647338.1 476873..478393(-) (comM) [Xanthomonas campestris pv. incanae strain 18048]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATSHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523763 JH290_RS02045 WP_223647338.1 476873..478393(-) (comM) [Xanthomonas campestris pv. incanae strain 18048]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCACCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCAAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAATGGCGCCGAGGCGGCGATTGCCGGACACGTGCAGGCCTTCACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCTTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTACTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCGATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCGCGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGTTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATTCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCAGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

53.094

99.012

0.526
  comM Legionella pneumophila strain ERS1305867

53.094

99.012

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462