Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH307_RS02040 Genome accession   NZ_CP066969
Coordinates   480625..482145 (-) Length   506 a.a.
NCBI ID   WP_040941986.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 10-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 475625..487145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH307_RS02015 (JH307_02005) - 475904..477025 (+) 1122 WP_274509396.1 acyl-CoA desaturase -
  JH307_RS02020 (JH307_02010) - 477039..477209 (+) 171 WP_158070205.1 hypothetical protein -
  JH307_RS02025 (JH307_02015) - 477630..479189 (-) 1560 WP_076040057.1 EAL domain-containing protein -
  JH307_RS02030 (JH307_02020) - 479571..479747 (+) 177 WP_012439469.1 hypothetical protein -
  JH307_RS02035 (JH307_02025) - 479758..480267 (-) 510 WP_042595605.1 lipocalin family protein -
  JH307_RS02040 (JH307_02030) comM 480625..482145 (-) 1521 WP_040941986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH307_RS02045 (JH307_02035) - 482161..482433 (-) 273 WP_011038948.1 accessory factor UbiK family protein -
  JH307_RS02050 (JH307_02040) - 482588..482962 (+) 375 WP_200900803.1 P-II family nitrogen regulator -
  JH307_RS02055 (JH307_02045) - 483254..483913 (-) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  JH307_RS02060 (JH307_02050) - 484443..485228 (+) 786 WP_274509397.1 hypothetical protein -
  JH307_RS02065 (JH307_02055) speE 485343..486200 (-) 858 WP_076040051.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53881.58 Da        Isoelectric Point: 8.3405

>NTDB_id=523692 JH307_RS02040 WP_040941986.1 480625..482145(-) (comM) [Xanthomonas campestris strain 10-16]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523692 JH307_RS02040 WP_040941986.1 480625..482145(-) (comM) [Xanthomonas campestris strain 10-16]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTAGCCATCGTCGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGCGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAAGACAGTGCCAGCGTGCGCGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGCCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTCGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

53.187

99.209

0.528
  comM Legionella pneumophila strain ERS1305867

53.187

99.209

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46