Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH273_RS09485 Genome accession   NZ_CP066963
Coordinates   2113522..2115042 (+) Length   506 a.a.
NCBI ID   WP_011038949.1    Uniprot ID   Q8P442
Organism   Xanthomonas campestris strain 3054     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2108522..2120042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH273_RS09460 (JH273_09440) speE 2109481..2110338 (+) 858 WP_274508487.1 polyamine aminopropyltransferase -
  JH273_RS09465 (JH273_09445) - 2110453..2111238 (-) 786 WP_070693719.1 hypothetical protein -
  JH273_RS09470 (JH273_09450) - 2111768..2112427 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  JH273_RS09475 (JH273_09455) - 2112705..2113079 (-) 375 WP_200900803.1 P-II family nitrogen regulator -
  JH273_RS09480 (JH273_09460) - 2113234..2113506 (+) 273 WP_011038948.1 accessory factor UbiK family protein -
  JH273_RS09485 (JH273_09465) comM 2113522..2115042 (+) 1521 WP_011038949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH273_RS09490 (JH273_09470) - 2115400..2115909 (+) 510 WP_070693723.1 lipocalin family protein -
  JH273_RS09495 (JH273_09475) - 2115920..2116096 (-) 177 WP_274508488.1 hypothetical protein -
  JH273_RS09500 (JH273_09480) - 2116478..2118037 (+) 1560 WP_012439470.1 EAL domain-containing protein -
  JH273_RS09505 (JH273_09485) - 2118458..2118628 (-) 171 WP_158070205.1 hypothetical protein -
  JH273_RS09510 (JH273_09490) - 2118642..2119763 (-) 1122 WP_274339667.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53909.63 Da        Isoelectric Point: 8.3405

>NTDB_id=523645 JH273_RS09485 WP_011038949.1 2113522..2115042(+) (comM) [Xanthomonas campestris strain 3054]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523645 JH273_RS09485 WP_011038949.1 2113522..2115042(+) (comM) [Xanthomonas campestris strain 3054]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCCATCGTCGCGCTTGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCTGCTGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTCGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P442

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.988

99.209

0.526
  comM Legionella pneumophila strain ERS1305867

52.988

99.209

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46