Detailed information NTG0523586

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH279_RS19820
• Genome accession: NZ_CP066956
• Coordinates: 4541144..4542664 (+)
• Length: 506 a.a.
• NCBI ID: WP_116670835.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. incanae strain 8-14
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4536144..4547664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH279_RS19795 (JH279_19710)	speE	4537088..4537945 (+)	858	WP_050912490.1	polyamine aminopropyltransferase	-
JH279_RS19800 (JH279_19715)	-	4538060..4538845 (-)	786	WP_274390953.1	hypothetical protein	-
JH279_RS19805 (JH279_19720)	-	4539383..4540042 (+)	660	WP_274390954.1	RIO1 family regulatory kinase/ATPase	-
JH279_RS19810 (JH279_19725)	-	4540327..4540701 (-)	375	WP_200900803.1	P-II family nitrogen regulator	-
JH279_RS19815 (JH279_19730)	-	4540856..4541128 (+)	273	WP_040941985.1	accessory factor UbiK family protein	-
JH279_RS19820 (JH279_19735)	comM	4541144..4542664 (+)	1521	WP_116670835.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH279_RS19825 (JH279_19740)	-	4543046..4543555 (+)	510	WP_274390955.1	lipocalin family protein	-
JH279_RS19830 (JH279_19745)	-	4543566..4543742 (-)	177	WP_181921557.1	hypothetical protein	-
JH279_RS19835 (JH279_19750)	-	4544124..4545683 (+)	1560	WP_076040057.1	EAL domain-containing protein	-
JH279_RS19840 (JH279_19755)	-	4546145..4546315 (-)	171	WP_274390956.1	hypothetical protein	-
JH279_RS19845 (JH279_19760)	-	4546329..4547450 (-)	1122	WP_274390957.1	acyl-CoA desaturase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53855.54 Da
• Isoelectric Point: 8.3405

>NTDB_id=523586 JH279_RS19820 WP_116670835.1 4541144..4542664(+) (comM) [Xanthomonas campestris pv. incanae strain 8-14]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=523586 JH279_RS19820 WP_116670835.1 4541144..4542664(+) (comM) [Xanthomonas campestris pv. incanae strain 8-14]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACTTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCCATCGTCGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAAGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCTGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTCGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.336	100	0.553
comM	Haemophilus influenzae Rd KW20	54.118	100	0.545
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Glaesserella parasuis strain SC1401	54.15	100	0.542
comM	Legionella pneumophila str. Paris	53.094	99.012	0.526
comM	Legionella pneumophila strain ERS1305867	53.094	99.012	0.526
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.462