Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | JH309_RS20205 | Genome accession | NZ_CP066955 |
| Coordinates | 4643568..4645088 (+) | Length | 506 a.a. |
| NCBI ID | WP_040941986.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 08288 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4597869..4656184 | 4643568..4645088 | within | 0 |
Gene organization within MGE regions
Location: 4597869..4656184
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH309_RS20035 (JH309_19970) | tyrS | 4605539..4606750 (-) | 1212 | WP_011038916.1 | tyrosine--tRNA ligase | - |
| JH309_RS20040 (JH309_19975) | - | 4606923..4608341 (+) | 1419 | WP_057673491.1 | M23 family metallopeptidase | - |
| JH309_RS20045 (JH309_19980) | - | 4608545..4609678 (+) | 1134 | WP_011038918.1 | anhydro-N-acetylmuramic acid kinase | - |
| JH309_RS20050 (JH309_19985) | - | 4609911..4610138 (-) | 228 | WP_011038919.1 | hypothetical protein | - |
| JH309_RS20055 (JH309_19990) | - | 4610197..4611492 (-) | 1296 | WP_057673494.1 | MFS transporter | - |
| JH309_RS20060 (JH309_19995) | - | 4611760..4612560 (-) | 801 | WP_011038921.1 | exodeoxyribonuclease III | - |
| JH309_RS20065 (JH309_20000) | pyrE | 4612681..4613340 (+) | 660 | WP_011038922.1 | orotate phosphoribosyltransferase | - |
| JH309_RS20070 (JH309_20005) | - | 4613366..4614028 (+) | 663 | WP_043877837.1 | hypothetical protein | - |
| JH309_RS20075 (JH309_20010) | - | 4614143..4614940 (+) | 798 | WP_011038924.1 | AAA family ATPase | - |
| JH309_RS20080 (JH309_20015) | - | 4614940..4615869 (+) | 930 | WP_011038925.1 | ParB/RepB/Spo0J family partition protein | - |
| JH309_RS20085 (JH309_20020) | - | 4615895..4616182 (+) | 288 | Protein_3888 | helix-hairpin-helix domain-containing protein | - |
| JH309_RS20090 (JH309_20025) | - | 4616278..4617006 (+) | 729 | WP_011038927.1 | suppressor of fused domain protein | - |
| JH309_RS20095 (JH309_20030) | - | 4617050..4618015 (+) | 966 | WP_011038928.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| JH309_RS20100 (JH309_20035) | - | 4618095..4618817 (+) | 723 | WP_011038929.1 | glycosyltransferase family 2 protein | - |
| JH309_RS20105 (JH309_20040) | - | 4618817..4619158 (+) | 342 | WP_011038930.1 | lipid-A-disaccharide synthase N-terminal domain-containing protein | - |
| JH309_RS20110 (JH309_20045) | - | 4619377..4619823 (+) | 447 | WP_011038931.1 | hypothetical protein | - |
| JH309_RS20115 (JH309_20050) | - | 4620137..4622479 (-) | 2343 | WP_192012381.1 | phosphomannomutase/phosphoglucomutase | - |
| JH309_RS20120 (JH309_20055) | dut | 4622495..4622962 (-) | 468 | WP_029217103.1 | dUTP diphosphatase | - |
| JH309_RS20125 (JH309_20060) | coaBC | 4622950..4624209 (-) | 1260 | WP_050911769.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| JH309_RS20130 (JH309_20065) | radC | 4624306..4624983 (+) | 678 | WP_050911770.1 | DNA repair protein RadC | - |
| JH309_RS20135 (JH309_20070) | argS | 4625071..4626759 (+) | 1689 | WP_050911771.1 | arginine--tRNA ligase | - |
| JH309_RS20140 (JH309_20075) | - | 4626806..4627666 (+) | 861 | WP_011038937.1 | SPOR domain-containing protein | - |
| JH309_RS20145 (JH309_20080) | - | 4627673..4628230 (+) | 558 | WP_011038938.1 | hypothetical protein | - |
| JH309_RS20150 (JH309_20085) | - | 4628255..4629010 (+) | 756 | WP_050911774.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| JH309_RS20155 (JH309_20090) | - | 4629371..4630495 (-) | 1125 | WP_019238051.1 | acyltransferase | - |
| JH309_RS20160 | - | 4630685..4630903 (+) | 219 | WP_016944942.1 | hypothetical protein | - |
| JH309_RS20165 (JH309_20100) | - | 4631173..4632507 (-) | 1335 | WP_050911775.1 | glycosyltransferase | - |
| JH309_RS20170 (JH309_20105) | - | 4632500..4636422 (-) | 3923 | Protein_3905 | amino acid adenylation domain-containing protein | - |
| JH309_RS20175 (JH309_20110) | speA | 4637365..4639251 (-) | 1887 | WP_057673497.1 | arginine decarboxylase | - |
| JH309_RS20180 (JH309_20115) | speE | 4639493..4640350 (+) | 858 | WP_011038944.1 | polyamine aminopropyltransferase | - |
| JH309_RS20185 (JH309_20120) | - | 4640465..4641247 (-) | 783 | WP_057673499.1 | hypothetical protein | - |
| JH309_RS20190 (JH309_20125) | - | 4641785..4642444 (+) | 660 | WP_057673501.1 | RIO1 family regulatory kinase/ATPase | - |
| JH309_RS20195 (JH309_20130) | - | 4642751..4643125 (-) | 375 | WP_029217016.1 | P-II family nitrogen regulator | - |
| JH309_RS20200 (JH309_20135) | - | 4643280..4643552 (+) | 273 | WP_040941985.1 | accessory factor UbiK family protein | - |
| JH309_RS20205 (JH309_20140) | comM | 4643568..4645088 (+) | 1521 | WP_040941986.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| JH309_RS20210 (JH309_20145) | - | 4645445..4645954 (+) | 510 | WP_057673502.1 | lipocalin family protein | - |
| JH309_RS20215 (JH309_20150) | - | 4645965..4646141 (-) | 177 | WP_012439469.1 | hypothetical protein | - |
| JH309_RS20220 (JH309_20155) | - | 4646523..4648082 (+) | 1560 | WP_050911777.1 | EAL domain-containing protein | - |
| JH309_RS20225 (JH309_20160) | - | 4648537..4648707 (-) | 171 | WP_154727132.1 | hypothetical protein | - |
| JH309_RS20230 (JH309_20165) | - | 4648721..4649842 (-) | 1122 | WP_221261707.1 | acyl-CoA desaturase | - |
| JH309_RS20235 (JH309_20170) | - | 4649852..4650928 (-) | 1077 | WP_221261708.1 | ferredoxin reductase | - |
| JH309_RS20240 (JH309_20175) | fabR | 4651022..4651669 (+) | 648 | WP_011038955.1 | HTH-type transcriptional repressor FabR | - |
| JH309_RS20245 (JH309_20180) | - | 4652045..4652704 (+) | 660 | WP_011038956.1 | UdgX family uracil-DNA binding protein | - |
| JH309_RS20255 (JH309_20190) | - | 4653785..4654906 (+) | 1122 | WP_057673504.1 | slipin family protein | - |
| JH309_RS20260 (JH309_20195) | - | 4654964..4656184 (+) | 1221 | WP_016944610.1 | RtcB family protein | - |
Sequence
Protein
Download Length: 506 a.a. Molecular weight: 53881.58 Da Isoelectric Point: 8.3405
>NTDB_id=523567 JH309_RS20205 WP_040941986.1 4643568..4645088(+) (comM) [Xanthomonas campestris pv. campestris strain 08288]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA
Nucleotide
Download Length: 1521 bp
>NTDB_id=523567 JH309_RS20205 WP_040941986.1 4643568..4645088(+) (comM) [Xanthomonas campestris pv. campestris strain 08288]
ATGAGTCTGGCACTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
TTGGAAGTGTGCGCCGCACTTAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTACTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A
ATGAGTCTGGCACTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
TTGGAAGTGTGCGCCGCACTTAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTACTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
55.336 |
100 |
0.553 |
| comM | Haemophilus influenzae Rd KW20 |
54.118 |
100 |
0.545 |
| comM | Vibrio campbellii strain DS40M4 |
53.711 |
100 |
0.543 |
| comM | Glaesserella parasuis strain SC1401 |
53.953 |
100 |
0.54 |
| comM | Legionella pneumophila str. Paris |
53.187 |
99.209 |
0.528 |
| comM | Legionella pneumophila strain ERS1305867 |
53.187 |
99.209 |
0.528 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.047 |
100 |
0.46 |