Detailed information NTG0523442

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH293_RS02040
• Genome accession: NZ_CP066943
• Coordinates: 482749..484269 (-)
• Length: 506 a.a.
• NCBI ID: WP_050912494.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 12049
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 477749..489269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH293_RS02015 (JH293_02020)	-	477986..479107 (+)	1122	WP_011038953.1	acyl-CoA desaturase	-
JH293_RS02020 (JH293_02025)	-	479121..479291 (+)	171	WP_154727132.1	hypothetical protein	-
JH293_RS02025 (JH293_02030)	-	479754..481313 (-)	1560	WP_050911777.1	EAL domain-containing protein	-
JH293_RS02030 (JH293_02035)	-	481695..481871 (+)	177	WP_012439469.1	hypothetical protein	-
JH293_RS02035 (JH293_02040)	-	481882..482391 (-)	510	WP_050912495.1	lipocalin family protein	-
JH293_RS02040 (JH293_02045)	comM	482749..484269 (-)	1521	WP_050912494.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH293_RS02045 (JH293_02050)	-	484285..484557 (-)	273	WP_040941985.1	accessory factor UbiK family protein	-
JH293_RS02050 (JH293_02055)	-	484712..485086 (+)	375	WP_200902597.1	P-II family nitrogen regulator	-
JH293_RS02055 (JH293_02060)	-	485354..486013 (-)	660	WP_050912492.1	RIO1 family regulatory kinase/ATPase	-
JH293_RS02060 (JH293_02065)	-	486541..487323 (+)	783	WP_054088444.1	hypothetical protein	-
JH293_RS02065 (JH293_02070)	speE	487438..488295 (-)	858	WP_050912490.1	polyamine aminopropyltransferase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53845.56 Da
• Isoelectric Point: 8.5244

>NTDB_id=523442 JH293_RS02040 WP_050912494.1 482749..484269(-) (comM) [Xanthomonas campestris pv. campestris strain 12049]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARDRQQARAQVPNARMDQATTDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
AIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=523442 JH293_RS02040 WP_050912494.1 482749..484269(-) (comM) [Xanthomonas campestris pv. campestris strain 12049]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
GTTACCCGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCACGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTAGCCCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGAGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCGATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCGCTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCACGCGACCGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGCATGGATCAGGCCACCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGTGCC
GCCATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.941	100	0.549
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Haemophilus influenzae Rd KW20	53.725	100	0.541
comM	Glaesserella parasuis strain SC1401	53.953	100	0.54
comM	Legionella pneumophila str. Paris	52.894	99.012	0.524
comM	Legionella pneumophila strain ERS1305867	52.894	99.012	0.524
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.462