Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | JH286_RS05375 | Genome accession | NZ_CP066939 |
| Coordinates | 1218036..1219766 (+) | Length | 576 a.a. |
| NCBI ID | WP_057671826.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. campestris strain 12112 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1219954..1221291 | 1218036..1219766 | flank | 188 |
Gene organization within MGE regions
Location: 1218036..1221291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH286_RS05375 (JH286_05380) | pilB | 1218036..1219766 (+) | 1731 | WP_057671826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 576 a.a. Molecular weight: 62599.69 Da Isoelectric Point: 5.6001
>NTDB_id=523429 JH286_RS05375 WP_057671826.1 1218036..1219766(+) (pilB) [Xanthomonas campestris pv. campestris strain 12112]
MSAVAANLVGITGIARRLVQDGALDEISARTAMDQAAAAKTPLPQWFSERKLVSASQLAAANAVEFGMPLMDVSVFDASQ
NAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLGS
DDDDIGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPE
HALLAEGFTPEQVANIDLYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKA
SHGVTSLAEINRVTKD
MSAVAANLVGITGIARRLVQDGALDEISARTAMDQAAAAKTPLPQWFSERKLVSASQLAAANAVEFGMPLMDVSVFDASQ
NAVKLVSEELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLGS
DDDDIGDLDVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPE
HALLAEGFTPEQVANIDLYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKA
SHGVTSLAEINRVTKD
Nucleotide
Download Length: 1731 bp
>NTDB_id=523429 JH286_RS05375 WP_057671826.1 1218036..1219766(+) (pilB) [Xanthomonas campestris pv. campestris strain 12112]
ATGAGTGCAGTCGCGGCGAACTTAGTAGGAATTACAGGCATTGCACGCCGCCTAGTGCAAGACGGAGCGCTTGATGAAAT
AAGTGCCCGTACCGCCATGGACCAAGCCGCGGCAGCGAAGACTCCGCTTCCCCAATGGTTCTCAGAGAGAAAGCTGGTTT
CCGCGTCTCAACTGGCTGCAGCCAACGCAGTCGAGTTCGGCATGCCTCTCATGGACGTTTCCGTGTTCGATGCTAGTCAG
AACGCGGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGTATCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTT
TGTGGGAGTGAGCAACCCGACCCAGACACGGGCGCTGGACGACATCAAGTTCCACACTAACTTGGTGGTCGAGCCGATTC
TGGTCGACGAGGACCAGATCCGTCGCACGCTAGAGCAGTGGCAGGCCAGTAACGCCGCGCTCGGCTCGTCGCTGGGGAGC
GACGATGACGATATAGGCGATCTAGACGTGTCCGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAAGGGCGATGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGACATCC
ATTTCGAGCCCTATGAAGATGACTACCGGGTGCGGTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAAGGCGCCGGTG
AAGCTCAACCAGCGCATCGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGATTTTCGCGTGAGCACCTTGCCGACCTTGTTCGGCGAGAAGG
TGGTGTTGCGTATCCTGGACGCCAGTGCGGCCAAGCTCGGTATCGAGAAGCTGGGCTATGAGGCGGACCAGCAGAAGCTG
TTCCTGGATGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTA
TACCGCGCTCGGGATTCTCAACGACGAGACGCGCAATATTTCCACGGCCGAGGATCCGGTCGAAATCCGCTTGCCCGGCG
TCAATCAGGTGCAGCAGAACGTCAAGCGGGGCATGACGTTTGCGGCGGCGCTGCGCTCGTTCCTGCGTCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGCCACATGGTGCT
GTCGACGTTGCACACCAACGATGCGCCGCAGACCATTGCGCGTCTGATGAACATGGGCATCGCGCCGTACAACATCACCT
CGTCGGTGACCCTGGTCATCGCGCAGCGCTTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCGGAA
CATGCGCTGCTGGCGGAAGGCTTTACGCCGGAGCAGGTTGCGAACATCGACCTCTATGAAGCGGTCGGTTGCGATGAGTG
CACGGAAGGCTACAAGGGCCGTACCGGCATCTATCAGGTGATGCCGATGACCGACGAGATCGGTGCGATCGTGCTGGAAG
GCGGCAATGCGATGCAGATCGCCGAGGCCGCACAGAAGATCGGTATCCGCGACCTGCGCCAGTCGGCGTTGATGAAGGCT
TCGCACGGGGTGACCAGCCTGGCCGAAATCAATCGTGTGACCAAGGACTGA
ATGAGTGCAGTCGCGGCGAACTTAGTAGGAATTACAGGCATTGCACGCCGCCTAGTGCAAGACGGAGCGCTTGATGAAAT
AAGTGCCCGTACCGCCATGGACCAAGCCGCGGCAGCGAAGACTCCGCTTCCCCAATGGTTCTCAGAGAGAAAGCTGGTTT
CCGCGTCTCAACTGGCTGCAGCCAACGCAGTCGAGTTCGGCATGCCTCTCATGGACGTTTCCGTGTTCGATGCTAGTCAG
AACGCGGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGTATCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTT
TGTGGGAGTGAGCAACCCGACCCAGACACGGGCGCTGGACGACATCAAGTTCCACACTAACTTGGTGGTCGAGCCGATTC
TGGTCGACGAGGACCAGATCCGTCGCACGCTAGAGCAGTGGCAGGCCAGTAACGCCGCGCTCGGCTCGTCGCTGGGGAGC
GACGATGACGATATAGGCGATCTAGACGTGTCCGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAAGGGCGATGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCGGACATCC
ATTTCGAGCCCTATGAAGATGACTACCGGGTGCGGTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAAGGCGCCGGTG
AAGCTCAACCAGCGCATCGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGACATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGATTTTCGCGTGAGCACCTTGCCGACCTTGTTCGGCGAGAAGG
TGGTGTTGCGTATCCTGGACGCCAGTGCGGCCAAGCTCGGTATCGAGAAGCTGGGCTATGAGGCGGACCAGCAGAAGCTG
TTCCTGGATGCGATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGCTGTA
TACCGCGCTCGGGATTCTCAACGACGAGACGCGCAATATTTCCACGGCCGAGGATCCGGTCGAAATCCGCTTGCCCGGCG
TCAATCAGGTGCAGCAGAACGTCAAGCGGGGCATGACGTTTGCGGCGGCGCTGCGCTCGTTCCTGCGTCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGCCACATGGTGCT
GTCGACGTTGCACACCAACGATGCGCCGCAGACCATTGCGCGTCTGATGAACATGGGCATCGCGCCGTACAACATCACCT
CGTCGGTGACCCTGGTCATCGCGCAGCGCTTGGCGCGGCGCTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCGGAA
CATGCGCTGCTGGCGGAAGGCTTTACGCCGGAGCAGGTTGCGAACATCGACCTCTATGAAGCGGTCGGTTGCGATGAGTG
CACGGAAGGCTACAAGGGCCGTACCGGCATCTATCAGGTGATGCCGATGACCGACGAGATCGGTGCGATCGTGCTGGAAG
GCGGCAATGCGATGCAGATCGCCGAGGCCGCACAGAAGATCGGTATCCGCGACCTGCGCCAGTCGGCGTTGATGAAGGCT
TCGCACGGGGTGACCAGCCTGGCCGAAATCAATCGTGTGACCAAGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
56.338 |
98.611 |
0.556 |
| pilB | Acinetobacter baylyi ADP1 |
55.282 |
98.611 |
0.545 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.083 |
100 |
0.521 |
| pilF | Neisseria gonorrhoeae MS11 |
49.12 |
98.611 |
0.484 |
| pilB | Vibrio cholerae strain A1552 |
49.817 |
94.792 |
0.472 |
| pilB | Vibrio campbellii strain DS40M4 |
46.046 |
98.785 |
0.455 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.333 |
97.049 |
0.45 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
35.41 |
100 |
0.375 |