Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH286_RS02035 Genome accession   NZ_CP066939
Coordinates   484518..486038 (-) Length   506 a.a.
NCBI ID   WP_040941986.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 12112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 479518..491038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH286_RS02005 (JH286_02010) - 479764..480885 (+) 1122 WP_011038953.1 acyl-CoA desaturase -
  JH286_RS02010 (JH286_02015) - 480899..481069 (+) 171 WP_154727132.1 hypothetical protein -
  JH286_RS02015 (JH286_02020) - 481243..481476 (-) 234 WP_146011557.1 hypothetical protein -
  JH286_RS02020 (JH286_02025) - 481524..483083 (-) 1560 WP_050911777.1 EAL domain-containing protein -
  JH286_RS02025 (JH286_02030) - 483465..483641 (+) 177 WP_012439469.1 hypothetical protein -
  JH286_RS02030 (JH286_02035) - 483652..484161 (-) 510 WP_057673502.1 lipocalin family protein -
  JH286_RS02035 (JH286_02040) comM 484518..486038 (-) 1521 WP_040941986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH286_RS02040 (JH286_02045) - 486054..486326 (-) 273 WP_040941985.1 accessory factor UbiK family protein -
  JH286_RS02045 (JH286_02050) - 486481..486855 (+) 375 WP_029217016.1 P-II family nitrogen regulator -
  JH286_RS02050 (JH286_02055) - 487141..487800 (-) 660 WP_057673501.1 RIO1 family regulatory kinase/ATPase -
  JH286_RS02055 (JH286_02060) - 488338..489120 (+) 783 WP_057673499.1 hypothetical protein -
  JH286_RS02060 (JH286_02065) speE 489235..490092 (-) 858 WP_011038944.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53881.58 Da        Isoelectric Point: 8.3405

>NTDB_id=523424 JH286_RS02035 WP_040941986.1 484518..486038(-) (comM) [Xanthomonas campestris pv. campestris strain 12112]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523424 JH286_RS02035 WP_040941986.1 484518..486038(-) (comM) [Xanthomonas campestris pv. campestris strain 12112]
ATGAGTCTGGCACTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
TTGGAAGTGTGCGCCGCACTTAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTACTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

53.187

99.209

0.528
  comM Legionella pneumophila strain ERS1305867

53.187

99.209

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46