Detailed information NTG0523423

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JH313_RS19870
• Genome accession: NZ_CP066937
• Coordinates: 4573888..4575408 (+)
• Length: 506 a.a.
• NCBI ID: WP_050912494.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 13108G
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4568888..4580408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH313_RS19845 (JH313_19815)	speE	4569862..4570719 (+)	858	WP_050912490.1	polyamine aminopropyltransferase	-
JH313_RS19850 (JH313_19820)	-	4570834..4571616 (-)	783	WP_054088444.1	hypothetical protein	-
JH313_RS19855 (JH313_19825)	-	4572144..4572803 (+)	660	WP_050912492.1	RIO1 family regulatory kinase/ATPase	-
JH313_RS19860 (JH313_19830)	-	4573071..4573445 (-)	375	WP_200902597.1	P-II family nitrogen regulator	-
JH313_RS19865 (JH313_19835)	-	4573600..4573872 (+)	273	WP_040941985.1	accessory factor UbiK family protein	-
JH313_RS19870 (JH313_19840)	comM	4573888..4575408 (+)	1521	WP_050912494.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JH313_RS19875 (JH313_19845)	-	4575785..4576294 (+)	510	WP_050912495.1	lipocalin family protein	-
JH313_RS19880 (JH313_19850)	-	4576305..4576481 (-)	177	WP_012439469.1	hypothetical protein	-
JH313_RS19885 (JH313_19855)	-	4576863..4578422 (+)	1560	WP_050911777.1	EAL domain-containing protein	-
JH313_RS19890 (JH313_19860)	-	4578893..4579063 (-)	171	WP_154727132.1	hypothetical protein	-
JH313_RS19895 (JH313_19865)	-	4579077..4580198 (-)	1122	WP_011038953.1	acyl-CoA desaturase	-

Sequence

Protein

• Length: 506 a.a.
• Molecular weight: 53845.56 Da
• Isoelectric Point: 8.5244

>NTDB_id=523423 JH313_RS19870 WP_050912494.1 4573888..4575408(+) (comM) [Xanthomonas campestris pv. campestris strain 13108G]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARDRQQARAQVPNARMDQATTDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
AIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide

• Length: 1521 bp

>NTDB_id=523423 JH313_RS19870 WP_050912494.1 4573888..4575408(+) (comM) [Xanthomonas campestris pv. campestris strain 13108G]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
GTTACCCGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCACGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTAGCCCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGAGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCGATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCGCTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCACGCGACCGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGCATGGATCAGGCCACCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGTGCC
GCCATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-394)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.941	100	0.549
comM	Vibrio campbellii strain DS40M4	53.711	100	0.543
comM	Haemophilus influenzae Rd KW20	53.725	100	0.541
comM	Glaesserella parasuis strain SC1401	53.953	100	0.54
comM	Legionella pneumophila str. Paris	52.894	99.012	0.524
comM	Legionella pneumophila strain ERS1305867	52.894	99.012	0.524
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.462