Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH310_RS20490 Genome accession   NZ_CP066936
Coordinates   4638304..4639824 (+) Length   506 a.a.
NCBI ID   WP_116670835.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 10090     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4633304..4644824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH310_RS20465 (JH310_20405) speE 4634248..4635105 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  JH310_RS20470 (JH310_20410) - 4635220..4636002 (-) 783 WP_011038945.1 hypothetical protein -
  JH310_RS20475 (JH310_20415) - 4636541..4637200 (+) 660 WP_012439467.1 RIO1 family regulatory kinase/ATPase -
  JH310_RS20480 (JH310_20420) - 4637486..4637860 (-) 375 WP_029217016.1 P-II family nitrogen regulator -
  JH310_RS20485 (JH310_20425) - 4638015..4638287 (+) 273 WP_011038948.1 accessory factor UbiK family protein -
  JH310_RS20490 (JH310_20430) comM 4638304..4639824 (+) 1521 WP_116670835.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH310_RS20495 (JH310_20435) - 4640182..4640691 (+) 510 WP_016944613.1 lipocalin family protein -
  JH310_RS20500 (JH310_20440) - 4640702..4640878 (-) 177 WP_012439469.1 hypothetical protein -
  JH310_RS20505 (JH310_20445) - 4641260..4642819 (+) 1560 WP_012439470.1 EAL domain-containing protein -
  JH310_RS20510 (JH310_20450) - 4643441..4644562 (-) 1122 WP_012439472.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53855.54 Da        Isoelectric Point: 8.3405

>NTDB_id=523405 JH310_RS20490 WP_116670835.1 4638304..4639824(+) (comM) [Xanthomonas campestris pv. campestris strain 10090]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523405 JH310_RS20490 WP_116670835.1 4638304..4639824(+) (comM) [Xanthomonas campestris pv. campestris strain 10090]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGTTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTACCCAGTCTATTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCACCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAACTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCACTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTAGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

53.094

99.012

0.526
  comM Legionella pneumophila strain ERS1305867

53.094

99.012

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462