Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH261_RS19170 Genome accession   NZ_CP066926
Coordinates   4471718..4473238 (+) Length   506 a.a.
NCBI ID   WP_274317714.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain CFBP6690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4466718..4478238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH261_RS19145 (JH261_19145) speE 4467649..4468506 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  JH261_RS19150 (JH261_19150) - 4468621..4469406 (-) 786 WP_274317712.1 hypothetical protein -
  JH261_RS19155 (JH261_19155) - 4469936..4470595 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  JH261_RS19160 (JH261_19160) - 4470901..4471275 (-) 375 WP_200900803.1 P-II family nitrogen regulator -
  JH261_RS19165 (JH261_19165) - 4471430..4471702 (+) 273 WP_274317713.1 accessory factor UbiK family protein -
  JH261_RS19170 (JH261_19170) comM 4471718..4473238 (+) 1521 WP_274317714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH261_RS19175 (JH261_19175) - 4473621..4474130 (+) 510 WP_042595605.1 lipocalin family protein -
  JH261_RS19180 (JH261_19180) - 4474141..4474317 (-) 177 WP_012439469.1 hypothetical protein -
  JH261_RS19185 (JH261_19185) - 4474699..4476258 (+) 1560 WP_050911777.1 EAL domain-containing protein -
  JH261_RS19190 (JH261_19190) - 4476713..4476883 (-) 171 WP_154727132.1 hypothetical protein -
  JH261_RS19195 (JH261_19195) - 4476897..4478018 (-) 1122 WP_274317715.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53859.55 Da        Isoelectric Point: 8.3405

>NTDB_id=523262 JH261_RS19170 WP_274317714.1 4471718..4473238(+) (comM) [Xanthomonas campestris pv. incanae strain CFBP6690]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARDRQQARAQVPNARMDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRAIDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523262 JH261_RS19170 WP_274317714.1 4471718..4473238(+) (comM) [Xanthomonas campestris pv. incanae strain CFBP6690]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCCATCGTCGCGCTGGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCACGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCACGCGACCGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGCATGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCTATCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.743

100

0.547
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Haemophilus influenzae Rd KW20

53.529

100

0.54
  comM Glaesserella parasuis strain SC1401

53.755

100

0.538
  comM Legionella pneumophila str. Paris

52.695

99.012

0.522
  comM Legionella pneumophila strain ERS1305867

52.695

99.012

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462