Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JH280_RS01835 Genome accession   NZ_CP066922
Coordinates   443888..445408 (-) Length   506 a.a.
NCBI ID   WP_116670835.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 5053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 438888..450408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH280_RS01810 (JH280_01820) - 439140..440261 (+) 1122 WP_042595610.1 acyl-CoA desaturase -
  JH280_RS01815 (JH280_01825) - 440275..440445 (+) 171 WP_274348115.1 hypothetical protein -
  JH280_RS01820 (JH280_01830) - 440868..442427 (-) 1560 WP_274348976.1 EAL domain-containing protein -
  JH280_RS01825 (JH280_01835) - 442809..442985 (+) 177 WP_012439469.1 hypothetical protein -
  JH280_RS01830 (JH280_01840) - 442996..443505 (-) 510 WP_042595605.1 lipocalin family protein -
  JH280_RS01835 (JH280_01845) comM 443888..445408 (-) 1521 WP_116670835.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JH280_RS01840 (JH280_01850) - 445424..445696 (-) 273 WP_040941985.1 accessory factor UbiK family protein -
  JH280_RS01845 (JH280_01855) - 445887..446225 (+) 339 WP_042595602.1 P-II family nitrogen regulator -
  JH280_RS01850 (JH280_01860) - 446500..447159 (-) 660 WP_274348116.1 RIO1 family regulatory kinase/ATPase -
  JH280_RS01855 (JH280_01865) - 447688..448473 (+) 786 WP_228419896.1 hypothetical protein -
  JH280_RS01860 (JH280_01870) speE 448588..449445 (-) 858 WP_274348117.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53855.54 Da        Isoelectric Point: 8.3405

>NTDB_id=523193 JH280_RS01835 WP_116670835.1 443888..445408(-) (comM) [Xanthomonas campestris strain 5053]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=523193 JH280_RS01835 WP_116670835.1 443888..445408(-) (comM) [Xanthomonas campestris strain 5053]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAACTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTGGCGCTCGGCGCACGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCACGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTACCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TTTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGCGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

53.094

99.012

0.526
  comM Legionella pneumophila strain ERS1305867

53.094

99.012

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462