Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ27_RS09640 Genome accession   NZ_CP066885
Coordinates   2079347..2081500 (-) Length   717 a.a.
NCBI ID   WP_200264663.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP079     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2074347..2086500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ27_RS09625 (JGZ27_09625) recQ 2074483..2076264 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  JGZ27_RS09630 (JGZ27_09630) - 2076274..2078151 (-) 1878 WP_200264661.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ27_RS09635 (JGZ27_09635) - 2078263..2079090 (+) 828 WP_200264662.1 ZIP family metal transporter -
  JGZ27_RS09640 (JGZ27_09640) comA 2079347..2081500 (-) 2154 WP_200264663.1 peptide cleavage/export ABC transporter Regulator
  JGZ27_RS09645 (JGZ27_09645) - 2081625..2081807 (-) 183 WP_037543780.1 hypothetical protein -
  JGZ27_RS09650 (JGZ27_09650) - 2081879..2082187 (-) 309 WP_049770161.1 DUF3884 family protein -
  JGZ27_RS09655 (JGZ27_09655) - 2082259..2083548 (-) 1290 WP_051144739.1 glycosyltransferase -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 81821.06 Da        Isoelectric Point: 9.8385

>NTDB_id=522982 JGZ27_RS09640 WP_200264663.1 2079347..2081500(-) (comA) [Staphylococcus pseudintermedius strain HSP079]
MKFSKRFYRAQVDSQDCGHGAXLAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDD
VQYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIP
LLLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSI
NILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYA
VIVFGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQ
LILNVSILWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQ
NSSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQ
IIYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGXRQKIALARALLTN
SSILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=522982 JGZ27_RS09640 WP_200264663.1 2079347..2081500(-) (comA) [Staphylococcus pseudintermedius strain HSP079]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGGCATGGCGCTNCGCTCGCTATGATATT
AGAATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATG
GTTTGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGAT
GTACAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAA
GTATATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTG
GAGTTACAATCTTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCT
TTATTATTAAAAGAAAAAAGGTTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTC
ATATTTTATGAAGTCAATTATTGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAA
TTGCTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATA
AATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACT
ATCAAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAA
TAGTTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCC
GTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTA
TTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATA
ATTTTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAA
TTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGT
TTTTAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTG
TGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAA
AACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAAC
AATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTT
TTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAG
ATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGT
TACGCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATA
GTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCNNAGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAAT
TCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGC
GTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAG
GAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-142)

ABC transporter (ABC_tran)

(501-651)

ABC transporter transmembrane region (ABC_membrane)

(170-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.417

100

0.534
  comA Streptococcus mitis NCTC 12261

53.278

100

0.533
  comA Streptococcus gordonii str. Challis substr. CH1

52.999

100

0.53
  comA Streptococcus pneumoniae R6

52.859

100

0.529
  comA Streptococcus pneumoniae Rx1

52.859

100

0.529
  comA Streptococcus pneumoniae D39

52.859

100

0.529
  comA Streptococcus pneumoniae TIGR4

52.58

100

0.526
  comA/nlmT Streptococcus mutans UA159

48.96

100

0.492