Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JGC41_RS15490 Genome accession   NZ_CP066794
Coordinates   3402909..3403460 (-) Length   183 a.a.
NCBI ID   WP_004160424.1    Uniprot ID   A0A831ESK2
Organism   Erwinia amylovora strain 17-2187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3397909..3408460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGC41_RS15475 (JGC41_15485) - 3398809..3399258 (-) 450 WP_004160420.1 DUF3828 domain-containing protein -
  JGC41_RS15480 (JGC41_15490) - 3400136..3400576 (-) 441 WP_223386214.1 hemagglutinin -
  JGC41_RS15485 (JGC41_15495) - 3400822..3402486 (-) 1665 WP_004160423.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  JGC41_RS15490 (JGC41_15500) ssb 3402909..3403460 (-) 552 WP_004160424.1 single-stranded DNA-binding protein Machinery gene
  JGC41_RS15495 (JGC41_15505) uvrA 3403713..3406541 (+) 2829 WP_004160425.1 excinuclease ABC subunit UvrA -
  JGC41_RS15500 (JGC41_15510) - 3406825..3407877 (+) 1053 WP_004163328.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19537.50 Da        Isoelectric Point: 5.2456

>NTDB_id=522580 JGC41_RS15490 WP_004160424.1 3402909..3403460(-) (ssb) [Erwinia amylovora strain 17-2187]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRAQGGGAPAGGQGGGNNNNGWGQPQQPQGGNQFSGGAQQSRPQPQ
QPQQNSTPANNEPPIDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=522580 JGC41_RS15490 WP_004160424.1 3402909..3403460(-) (ssb) [Erwinia amylovora strain 17-2187]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTTTAGTCGGAAATCTGGGGCAGGATCCGGAAGTCCGCTACATGCCAAATGG
CGGCGCCGTTGCCAACATCACTCTGGCCACCTCCGAAAGCTGGCGTGACAAGCAGACTGGCGAAACCAAAGAAAAAACCG
AATGGCACCGCGTGGTACTGTTTGGCAAGCTGGCCGAAGTGGCCGGTGAGTATCTGCGCAAAGGCTCTCAGGTATATATT
GAGGGCGCTCTGCAAACGCGTAAATGGACCGATCAGGCTGGCGTTGAGAAATACACCACCGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTGCACAGGGCGGCGGTGCACCAGCCGGTGGCCAGGGTGGTGGGAACAATAACA
ATGGTTGGGGCCAGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGCAGTCCCGCCCGCAGCCGCAG
CAGCCGCAGCAGAACAGCACACCGGCGAATAATGAACCGCCAATCGACTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A831ESK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.809

100

0.738
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.579
  ssb Neisseria meningitidis MC58

44.382

97.268

0.432
  ssb Neisseria gonorrhoeae MS11

43.82

97.268

0.426
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.872

97.814

0.361