Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JDW18_RS22295 Genome accession   NZ_CP066783
Coordinates   4808959..4809507 (-) Length   182 a.a.
NCBI ID   WP_218241757.1    Uniprot ID   -
Organism   Comamonas fluminis strain CJ34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4803959..4814507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDW18_RS22275 moaC 4805258..4805728 (+) 471 WP_218241753.1 cyclic pyranopterin monophosphate synthase MoaC -
  JDW18_RS22280 - 4805635..4807173 (-) 1539 WP_218241754.1 O-antigen ligase family protein -
  JDW18_RS22765 pilE 4807308..4807754 (-) 447 WP_218241755.1 pilin Machinery gene
  JDW18_RS22290 - 4807949..4808662 (-) 714 WP_218241756.1 FHA domain-containing protein -
  JDW18_RS22295 ssb 4808959..4809507 (-) 549 WP_218241757.1 single-stranded DNA-binding protein Machinery gene
  JDW18_RS22300 - 4809624..4810799 (-) 1176 WP_218244031.1 MFS transporter -
  JDW18_RS22305 uvrA 4811026..4814115 (+) 3090 WP_218241758.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19929.03 Da        Isoelectric Point: 5.9603

>NTDB_id=522521 JDW18_RS22295 WP_218241757.1 4808959..4809507(-) (ssb) [Comamonas fluminis strain CJ34]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNSGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADTMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRAPAPAPMQQQRPAAPAARPAPA
PMSPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=522521 JDW18_RS22295 WP_218241757.1 4808959..4809507(-) (ssb) [Comamonas fluminis strain CJ34]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCGGAAATGCGCACCTTCCCCAGCGGCGACCA
AGTGGCCAACGTGACCATCGCCACCACGGACCGCTGGCGCGACAAGAATTCTGGCGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTCGTCTTCAACGGCAAACTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACTGATCAAGCCACCGGCCAGGAGCGCTACGCCACAGAAATCCGCGCCGACACCATGCA
AATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGTGGCTACGGCAGCGATGACGGCTACGGCGAAAGCAGCTACG
AAGCGCCCCGCCGTGCTCCCGCTCCTGCCCCCATGCAGCAACAGCGCCCAGCAGCGCCTGCGGCCCGTCCTGCACCGGCC
CCCATGTCGCCCCCACCCCAGCGCGCCGCTTCGGGCTTTGACGACATGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.88

100

0.555
  ssb Glaesserella parasuis strain SC1401

51.351

100

0.522
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.478
  ssb Neisseria meningitidis MC58

44.385

100

0.456