Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JDW18_RS01095 Genome accession   NZ_CP066783
Coordinates   183133..184677 (+) Length   514 a.a.
NCBI ID   WP_218241946.1    Uniprot ID   -
Organism   Comamonas fluminis strain CJ34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 178133..189677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDW18_RS01075 glcE 178856..180010 (-) 1155 WP_218241942.1 glycolate oxidase subunit GlcE -
  JDW18_RS01080 amt 180305..181648 (-) 1344 WP_218241943.1 ammonium transporter -
  JDW18_RS01085 glnK 181678..182016 (-) 339 WP_218241944.1 P-II family nitrogen regulator -
  JDW18_RS01090 - 182034..182786 (-) 753 WP_218241945.1 TorF family putative porin -
  JDW18_RS01095 comM 183133..184677 (+) 1545 WP_218241946.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JDW18_RS01100 - 184703..185881 (-) 1179 WP_218241947.1 low temperature requirement protein A -
  JDW18_RS01105 - 185871..186143 (-) 273 WP_218241948.1 hypothetical protein -
  JDW18_RS01110 - 186201..187106 (-) 906 WP_218241949.1 LysR substrate-binding domain-containing protein -
  JDW18_RS01115 - 187215..188396 (+) 1182 WP_218241950.1 YbfB/YjiJ family MFS transporter -
  JDW18_RS01120 - 188422..189486 (+) 1065 WP_218241951.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54898.83 Da        Isoelectric Point: 6.8642

>NTDB_id=522505 JDW18_RS01095 WP_218241946.1 183133..184677(+) (comM) [Comamonas fluminis strain CJ34]
MGLALVQSRALLGLDAPGVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNSGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIEAARLADYEFAGELSLTGALRPVRGALATALALQRQQRDVRLVLPVDSAQEAAFVPAIEVFGA
EHLLDVVKQFMAHAAAAPDDANVDAEGWQIMQPRPAEPVPYVQDLSEVRGQMQAKRALEIAAAGAHGVLMIGSPGSGKSM
LAQRFAALLPPMTDDEALEAAAIASLSGRFTLAQWRQRPFAAPHHTASSVALVGGGSPPRPGEISYAHCGALFLDELPEF
ARSALEALREPLETGRITIVRAARRAEFPARFQLVAAMNPCPCGYWGSWVRACRCTPDQVARYQARISGPLLDRIDLHVE
VAALPPEELLAAAEGERSATVQQRVSLARDRALQRQGTSNHLLQGAQLDAHLQLEPEALAFAHKAAARLGWSARGTHRAL
KVARTIADLAGSDTIAQAHVAEALQYRRALLQPH

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=522505 JDW18_RS01095 WP_218241946.1 183133..184677(+) (comM) [Comamonas fluminis strain CJ34]
ATGGGGCTTGCACTGGTTCAAAGTCGTGCCTTGCTGGGGCTGGATGCGCCGGGAGTTACCGTGGAAGTCCATCTGGCCAA
CGGTTTGCCATCTTTCACCCTGGTGGGCCTGGCTGATGTGGAAGTCAAAGAAGCCCGCGAGCGGGTGCGTGCCGCCATCG
TCAATTCGGGGCTGGAGTTCCCCAACAACAAACGCATTACGGTCAACCTTGCACCGGCAGATTTGCCCAAGGATTCGGGG
CGATTTGACTTGCCGATTGCGCTGGGCATTCTGGCGGCCAGCGGCCAGATCGAGGCCGCCAGACTAGCGGATTACGAATT
TGCAGGCGAGCTATCGCTGACAGGCGCATTGCGCCCGGTGCGTGGGGCATTGGCCACTGCGCTGGCGCTGCAGCGTCAGC
AGCGCGATGTGCGGCTGGTGCTGCCAGTCGATAGCGCGCAGGAGGCCGCTTTTGTTCCGGCCATTGAAGTCTTTGGGGCA
GAGCACCTGCTGGATGTGGTCAAGCAGTTCATGGCCCATGCGGCGGCAGCGCCAGACGATGCGAATGTGGACGCAGAGGG
CTGGCAGATCATGCAGCCCAGGCCCGCCGAGCCAGTGCCCTATGTGCAGGACTTGAGCGAGGTGCGTGGCCAGATGCAGG
CCAAGCGTGCTCTTGAAATTGCAGCAGCTGGCGCGCATGGGGTCTTGATGATCGGGTCCCCGGGCTCTGGAAAGTCCATG
CTGGCCCAGCGCTTTGCCGCCCTGCTGCCTCCCATGACGGATGATGAGGCACTGGAGGCCGCAGCCATCGCCAGCCTCAG
CGGCCGCTTCACGCTTGCGCAATGGCGGCAGCGCCCTTTTGCGGCGCCCCATCACACGGCCAGTTCGGTGGCGCTGGTGG
GCGGTGGCTCACCACCCCGGCCCGGAGAAATTTCCTATGCGCACTGTGGCGCGCTCTTTCTGGACGAATTGCCGGAATTC
GCCCGTAGTGCGCTGGAAGCCTTGCGTGAGCCGCTGGAGACCGGGCGCATCACCATTGTGCGGGCTGCGCGGCGTGCAGA
GTTTCCCGCGCGCTTTCAGCTGGTGGCTGCCATGAACCCTTGCCCCTGTGGCTACTGGGGATCGTGGGTGCGGGCCTGCC
GCTGCACGCCCGATCAGGTGGCGCGCTATCAGGCGCGTATCAGTGGCCCCTTGCTCGACCGCATTGATCTGCATGTGGAA
GTGGCGGCCCTGCCGCCTGAGGAATTGCTGGCAGCGGCAGAGGGAGAGCGCAGCGCCACTGTGCAGCAGCGCGTAAGCCT
GGCGCGTGACAGGGCTTTGCAGCGCCAGGGAACCAGCAACCATTTGCTGCAAGGCGCGCAGCTGGATGCACATCTGCAGT
TGGAGCCCGAAGCCCTGGCCTTTGCCCACAAGGCCGCTGCCCGGCTGGGCTGGTCAGCACGCGGCACACACCGTGCGCTG
AAGGTGGCGCGCACGATTGCTGATCTGGCAGGCTCTGACACCATTGCCCAGGCGCATGTGGCCGAAGCTTTGCAATATCG
CAGAGCCTTGCTGCAGCCGCATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.055

99.416

0.518
  comM Vibrio campbellii strain DS40M4

51.473

99.027

0.51
  comM Haemophilus influenzae Rd KW20

49.515

100

0.496
  comM Glaesserella parasuis strain SC1401

48.728

99.416

0.484
  comM Legionella pneumophila str. Paris

47.582

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.582

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.416

0.426