Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   JGZ50_RS12625 Genome accession   NZ_CP066713
Coordinates   2088039..2088236 (-) Length   65 a.a.
NCBI ID   WP_197737723.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP026     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083039..2093236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ50_RS09955 (JGZ50_09955) - 2083134..2085011 (-) 1878 WP_103863357.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ50_RS09960 (JGZ50_09960) - 2085123..2085938 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JGZ50_RS09965 (JGZ50_09965) - 2086195..2088060 (-) 1866 Protein_1936 peptide cleavage/export ABC transporter -
  JGZ50_RS12625 (JGZ50_09970) comA/nlmT 2088039..2088236 (-) 198 WP_197737723.1 cysteine peptidase family C39 domain-containing protein Regulator
  JGZ50_RS12630 (JGZ50_09975) - 2088160..2088351 (-) 192 WP_197737724.1 cysteine peptidase family C39 domain-containing protein -
  JGZ50_RS09980 (JGZ50_09980) - 2088726..2089034 (-) 309 WP_063284913.1 DUF3884 family protein -
  JGZ50_RS09985 (JGZ50_09985) - 2089109..2089471 (-) 363 WP_131090790.1 hypothetical protein -
  JGZ50_RS09990 (JGZ50_09990) - 2089528..2090238 (-) 711 WP_199274729.1 glycosyltransferase -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7458.87 Da        Isoelectric Point: 8.5703

>NTDB_id=521948 JGZ50_RS12625 WP_197737723.1 2088039..2088236(-) (comA/nlmT) [Staphylococcus pseudintermedius strain DSP026]
MDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDLQYPFIVHVKKITIIFTIML

Nucleotide


Download         Length: 198 bp        

>NTDB_id=521948 JGZ50_RS12625 WP_197737723.1 2088039..2088236(-) (comA/nlmT) [Staphylococcus pseudintermedius strain DSP026]
TTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTTTGGTTCAGGTAGCAGATAAGTT
AGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATTTACAGTATCCTTTTATCGTTCATG
TTAAAAAAATAACAATCATTTTCACTATTATGTTGTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(2-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

59.259

83.077

0.492
  comA Streptococcus mitis SK321

56.604

81.538

0.462
  comA Streptococcus mitis NCTC 12261

56.604

81.538

0.462
  comA Streptococcus pneumoniae TIGR4

56.604

81.538

0.462
  comA Streptococcus pneumoniae Rx1

56.604

81.538

0.462
  comA Streptococcus pneumoniae D39

56.604

81.538

0.462
  comA Streptococcus pneumoniae R6

56.604

81.538

0.462
  comA Streptococcus gordonii str. Challis substr. CH1

56.604

81.538

0.462