Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ40_RS10845 Genome accession   NZ_CP066712
Coordinates   2242318..2244468 (-) Length   716 a.a.
NCBI ID   WP_187530420.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain DSP027     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237318..2249468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ40_RS10830 (JGZ40_10760) recQ 2237464..2239245 (-) 1782 WP_100006801.1 DNA helicase RecQ -
  JGZ40_RS10835 (JGZ40_10765) - 2239255..2241132 (-) 1878 WP_100006802.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ40_RS10840 (JGZ40_10770) - 2241244..2242061 (+) 818 Protein_2131 ZIP family metal transporter -
  JGZ40_RS10845 (JGZ40_10775) comA 2242318..2244468 (-) 2151 WP_187530420.1 peptide cleavage/export ABC transporter Regulator
  JGZ40_RS10850 (JGZ40_10780) - 2244593..2244775 (-) 183 WP_037543780.1 hypothetical protein -
  JGZ40_RS10855 (JGZ40_10785) - 2244847..2245158 (-) 312 WP_233276500.1 DUF3884 family protein -
  JGZ40_RS10860 (JGZ40_10790) - 2245230..2246519 (-) 1290 WP_233276501.1 glycosyltransferase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81641.35 Da        Isoelectric Point: 9.8385

>NTDB_id=521910 JGZ40_RS10845 WP_187530420.1 2242318..2244468(-) (comA) [Staphylococcus pseudintermedius strain DSP027]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPL
LLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSIN
ILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAV
IVFGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQL
ILNVSILWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQN
SSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQI
IYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNS
SILIMDEATSNIDILTERKIINNLIALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=521910 JGZ40_RS10845 WP_187530420.1 2242318..2244468(-) (comA) [Staphylococcus pseudintermedius strain DSP027]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAG
TTACAATCTTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCTTTA
TTATTAAAAGAAAAAAGGTTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATA
TTTTATGAAGTCAATTATTGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTG
CTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAAT
ATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATC
AAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAG
TTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTA
ATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTT
GATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATT
TTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAATGTTTTGAAAAAGGTTGTTCAATTA
ATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTT
TAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGG
CTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAAC
TCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAAT
AGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTT
TTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATT
ATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTAC
GCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTG
TATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCT
TCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATAGCGTT
AAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAA
AAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(169-437)

ABC transporter (ABC_tran)

(500-650)

Peptidase C39 family (Peptidase_C39)

(8-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.492

100

0.535
  comA Streptococcus mitis NCTC 12261

53.352

100

0.534
  comA Streptococcus pneumoniae D39

53.212

100

0.532
  comA Streptococcus pneumoniae R6

53.212

100

0.532
  comA Streptococcus pneumoniae Rx1

53.212

100

0.532
  comA Streptococcus gordonii str. Challis substr. CH1

53.212

100

0.532
  comA Streptococcus pneumoniae TIGR4

52.933

100

0.529
  comA/nlmT Streptococcus mutans UA159

49.167

100

0.494