Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3176_RS23395 Genome accession   NZ_CP081202
Coordinates   4843244..4843741 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain P9W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4838244..4848741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3176_RS23375 (K3176_23375) pchD 4839019..4840671 (+) 1653 WP_221388716.1 (2,3-dihydroxybenzoyl)adenylate synthase -
  K3176_RS23380 (K3176_23380) pchC 4840668..4841423 (+) 756 WP_003118944.1 pyochelin biosynthesis editing thioesterase PchC -
  K3176_RS23385 (K3176_23385) pchB 4841423..4841728 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  K3176_RS23390 (K3176_23390) pchA 4841725..4843155 (+) 1431 WP_003114686.1 isochorismate synthase PchA -
  K3176_RS23395 (K3176_23395) ssb 4843244..4843741 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  K3176_RS23400 (K3176_23400) - 4843758..4845146 (-) 1389 WP_003103910.1 MFS transporter -
  K3176_RS23405 (K3176_23405) uvrA 4845360..4848197 (+) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  K3176_RS23410 (K3176_23410) bfr 4848269..4848733 (-) 465 WP_023910872.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=521884 K3176_RS23395 WP_003114685.1 4843244..4843741(-) (ssb) [Pseudomonas aeruginosa strain P9W]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=521884 K3176_RS23395 WP_003114685.1 4843244..4843741(-) (ssb) [Pseudomonas aeruginosa strain P9W]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515