Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ56_RS12185 Genome accession   NZ_CP066711
Coordinates   2579740..2580246 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain DSP030     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2574740..2585246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ56_RS12170 (JGZ56_12170) - 2575957..2577948 (+) 1992 WP_014614918.1 catalase -
  JGZ56_RS12175 (JGZ56_12175) - 2578162..2579253 (-) 1092 WP_126511042.1 Abi family protein -
  JGZ56_RS12180 (JGZ56_12180) rpsR 2579444..2579686 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ56_RS12185 (JGZ56_12185) ssbA 2579740..2580246 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JGZ56_RS12190 (JGZ56_12190) rpsF 2580269..2580565 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ56_RS12195 (JGZ56_12195) sbi 2580902..2582398 (+) 1497 WP_065520724.1 Ig-binding surface protein Sbi/SpsK -
  JGZ56_RS12200 (JGZ56_12200) - 2582452..2583261 (-) 810 WP_187525938.1 ABC transporter permease subunit -
  JGZ56_RS12205 (JGZ56_12205) - 2583254..2584189 (-) 936 WP_014614924.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=521885 JGZ56_RS12185 WP_014614920.1 2579740..2580246(-) (ssbA) [Staphylococcus pseudintermedius strain DSP030]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=521885 JGZ56_RS12185 WP_014614920.1 2579740..2580246(-) (ssbA) [Staphylococcus pseudintermedius strain DSP030]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381