Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ10_RS09615 Genome accession   NZ_CP066708
Coordinates   2057475..2059619 (-) Length   714 a.a.
NCBI ID   WP_199274492.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP125     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2052475..2064619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ10_RS09600 (JGZ10_09600) recQ 2052623..2054404 (-) 1782 WP_014614539.1 DNA helicase RecQ -
  JGZ10_RS09605 (JGZ10_09605) - 2054414..2056291 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ10_RS09610 (JGZ10_09610) - 2056403..2057218 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JGZ10_RS09615 (JGZ10_09615) comA 2057475..2059619 (-) 2145 WP_199274492.1 peptide cleavage/export ABC transporter Regulator
  JGZ10_RS09620 (JGZ10_09620) - 2059994..2060302 (-) 309 WP_187530820.1 DUF3884 family protein -
  JGZ10_RS09625 (JGZ10_09625) - 2060377..2060739 (-) 363 WP_131090790.1 hypothetical protein -
  JGZ10_RS09630 (JGZ10_09630) - 2060807..2061508 (-) 702 WP_199274493.1 glycosyltransferase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 81502.46 Da        Isoelectric Point: 9.8368

>NTDB_id=521781 JGZ10_RS09615 WP_199274492.1 2057475..2059619(-) (comA) [Staphylococcus pseudintermedius strain HSP125]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDL
QYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPVVNLTKMPYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTYFIPLLL
KEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIMQQILSYLQKYFLILLVKTYSINIL
SPYIKHLFRLPITFFETGRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIV
FGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFLNYCEKTFLLNKLNIKKNVLKKVVQLIL
NVSILWVGANLVIDNQISIGTLLVFNSLMIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSS
KLIFSNISYGYVYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKLMVSFFEPSKGKITLGGLDITNINKSVLRQQIIY
IPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSI
LIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=521781 JGZ10_RS09615 WP_199274492.1 2057475..2059619(-) (comA) [Staphylococcus pseudintermedius strain HSP125]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGACTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATTTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGTTGTTAATTTAACAAAGATGCCTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAA
TCTTATTAAAACCTACATCTTTATATAAGCCTATAAAGCAAGATAAAGTTCGTTTAACTTATTTTATACCTTTATTATTA
AAAGAAAAAAGATTGATTATAAAAATAATAATCATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTAT
GAAGTCAATTATTGATTTTTATATTCCCCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTT
ACATTATGCAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTT
TCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGGGAAGAGCAGGAGACATACTATCAAGACT
TAATGATGCAAATTCAATTACTGATGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGCA
TATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTT
TTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGA
AAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTTGA
ATTATTGCGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGAAAAACGTTTTGAAAAAGGTTGTTCAATTAATATTA
AATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTC
ATTAATGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATA
ATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGT
AAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACA
TAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATTGATGGTTAGTTTTTTTGAAC
CTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATAC
ATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAA
GGACATAGATAGTGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAA
GTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATA
TTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAA
AACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTA
TAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(167-435)

ABC transporter (ABC_tran)

(498-648)

Peptidase C39 family (Peptidase_C39)

(8-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

52.793

100

0.529
  comA Streptococcus mitis NCTC 12261

52.654

100

0.528
  comA Streptococcus pneumoniae D39

52.235

100

0.524
  comA Streptococcus pneumoniae R6

52.235

100

0.524
  comA Streptococcus pneumoniae Rx1

52.235

100

0.524
  comA Streptococcus gordonii str. Challis substr. CH1

52.235

100

0.524
  comA Streptococcus pneumoniae TIGR4

51.955

100

0.521
  comA/nlmT Streptococcus mutans UA159

48.472

100

0.489