Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JGZ55_RS09515 Genome accession   NZ_CP066706
Coordinates   2031707..2033359 (-) Length   550 a.a.
NCBI ID   WP_320205917.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP134     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026707..2038359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ55_RS09500 (JGZ55_09480) recQ 2026855..2028636 (-) 1782 WP_015728744.1 DNA helicase RecQ -
  JGZ55_RS09505 (JGZ55_09485) - 2028646..2030523 (-) 1878 WP_199273454.1 ABC-F family ATP-binding cassette domain-containing protein -
  JGZ55_RS09510 (JGZ55_09490) - 2030635..2031450 (+) 816 WP_015728742.1 ZIP family metal transporter -
  JGZ55_RS09515 (JGZ55_09495) comA 2031707..2033359 (-) 1653 WP_320205917.1 peptide cleavage/export ABC transporter Regulator
  JGZ55_RS11860 comA 2033356..2033556 (-) 201 WP_320205971.1 cysteine peptidase family C39 domain-containing protein Regulator
  JGZ55_RS11865 comA 2033556..2033855 (-) 300 WP_277922754.1 cysteine peptidase family C39 domain-containing protein Regulator
  JGZ55_RS09520 (JGZ55_09500) - 2033980..2034162 (-) 183 WP_037543780.1 hypothetical protein -
  JGZ55_RS09525 (JGZ55_09505) - 2034234..2034542 (-) 309 WP_049770161.1 DUF3884 family protein -
  JGZ55_RS09530 (JGZ55_09510) - 2034614..2035903 (-) 1290 WP_051144739.1 glycosyltransferase -

Sequence

Protein


Download         Length: 550 a.a.        Molecular weight: 62283.78 Da        Isoelectric Point: 9.8149

>NTDB_id=521747 JGZ55_RS09515 WP_320205917.1 2031707..2033359(-) (comA) [Staphylococcus pseudintermedius strain HSP134]
MIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSINILSPYI
KHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFM
NSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQLILNVSI
LWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIF
SNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQ
TYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMD
EATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1653 bp        

>NTDB_id=521747 JGZ55_RS09515 WP_320205917.1 2031707..2033359(-) (comA) [Staphylococcus pseudintermedius strain HSP134]
TTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTAT
TGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTGCTTCTTACATTATACAAC
AAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAATATACTTTCACCATACATT
AAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATCAAGACTTAATGATGCAAA
TTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAGTTGGAATATCTATCTTCC
TGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTAATTGTTTTTGGTTTTATG
AACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTTGATGGAAAATATAACAGG
TATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATTTTTCGAATTATTACGAAA
AAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTAAAAAAGGTTGTTCAATTAATATTAAATGTATCGATT
TTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTTTAATTCATTAGTGATTTA
CTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGGCTAATAATCGATTGAATG
AAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAACTCAAGTAAACTTATATTT
TCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATATTAATATAACAATAGAACATAATAGTAAAGT
AGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATGATGGTTAGTTTTTTTGAACCTTCAAAGGGTA
AAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATTATATACATTCCACAACAA
ACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTACGCAAAAGGACATAGATAG
TGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTGTATTAAGTTCTGATTTTT
CTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCTTCTATATTGATAATGGAT
GAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTTAAATAAAACTATTATATT
TATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAAAAATTATAGAAGAGGGCT
CACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)

ABC transporter (ABC_tran)

(334-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.091

100

0.531
  comA Streptococcus mitis NCTC 12261

52.909

100

0.529
  comA Streptococcus pneumoniae D39

52.545

100

0.525
  comA Streptococcus pneumoniae R6

52.545

100

0.525
  comA Streptococcus pneumoniae Rx1

52.545

100

0.525
  comA Streptococcus gordonii str. Challis substr. CH1

52.364

100

0.524
  comA Streptococcus pneumoniae TIGR4

52.182

100

0.522
  comA/nlmT Streptococcus mutans UA159

49.818

100

0.498