Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPV_RS03205 Genome accession   NC_018140
Coordinates   675412..676923 (-) Length   503 a.a.
NCBI ID   WP_014843439.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670412..681923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS03175 (LPV_0692) - 671272..672036 (+) 765 WP_010946322.1 hypothetical protein -
  LPV_RS03180 (LPV_0693) - 672340..672903 (+) 564 WP_014843435.1 YqgE/AlgH family protein -
  LPV_RS03185 (LPV_0694) ruvX 672896..673315 (+) 420 WP_014843436.1 Holliday junction resolvase RuvX -
  LPV_RS03190 (LPV_0695) - 673365..674258 (+) 894 WP_014843437.1 aspartate carbamoyltransferase catalytic subunit -
  LPV_RS03195 (LPV_0696) - 674314..674640 (-) 327 WP_011945754.1 hypothetical protein -
  LPV_RS03200 (LPV_0697) - 674923..675309 (-) 387 WP_014843438.1 hypothetical protein -
  LPV_RS03205 (LPV_0698) comM 675412..676923 (-) 1512 WP_014843439.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPV_RS03210 (LPV_0699) ubiK 676988..677248 (-) 261 WP_011213199.1 ubiquinone biosynthesis accessory factor UbiK -
  LPV_RS03215 (LPV_0700) - 677393..677731 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  LPV_RS03220 (LPV_0701) - 677741..678322 (-) 582 WP_014843440.1 5-formyltetrahydrofolate cyclo-ligase -
  LPV_RS03225 (LPV_0702) - 678569..678754 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  LPV_RS03230 (LPV_0703) - 678768..679583 (+) 816 WP_010946332.1 aminotransferase class IV -
  LPV_RS03235 (LPV_0704) - 679610..680293 (-) 684 WP_050598542.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54979.54 Da        Isoelectric Point: 8.0870

>NTDB_id=52155 LPV_RS03205 WP_014843439.1 675412..676923(-) (comM) [Legionella pneumophila subsp. pneumophila]
MSLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANSPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHQKVFTANNL
REVCDYLCQGTSLQNLPPKPNLLLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCMCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMNE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=52155 LPV_RS03205 WP_014843439.1 675412..676923(-) (comM) [Legionella pneumophila subsp. pneumophila]
ATGAGTCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACTGTTAATCTTGGCCCTGCCAATTCACCTAAAACGGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCGGAACAAATCCCTCTCACCAACCTTGCAAACCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AACATCTGATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCATCAAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAAATCTTTTATTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCACCAGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTACCTGAGCTATCCGAA
ACACAAGCTCTCGAGTGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCCCCTTT
TCGTGCACCACATCATACTGCTTCACCTGTCGCGTTAGTCGGAGGAGGCAACCCGCCGAAACCTGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTGGAGACACTTAGAGAACCTTTGGAG
TCAGGGCATATTTGCATTTCCAGGGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCATGTGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGGGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTGCTAAAAGTAAGCAGGACAATTGCTGATATGAATGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

97.813

100

0.978
  comM Legionella pneumophila strain ERS1305867

97.813

100

0.978
  comM Haemophilus influenzae Rd KW20

50.197

100

0.507
  comM Vibrio cholerae strain A1552

50.099

100

0.501
  comM Vibrio campbellii strain DS40M4

49.802

100

0.499
  comM Glaesserella parasuis strain SC1401

47.535

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.169

99.006

0.417

Multiple sequence alignment