NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	JFL59_RS01410	Genome accession	NZ_CP066566
Coordinates	266838..267296 (+)	Length	152 a.a.
NCBI ID	WP_075293673.1	Uniprot ID	A0A9Q6Z0V5
Organism	Histophilus somni strain ASc-MMNZ-VFA-078
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 261838..272296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFL59_RS01380 (JFL59_01380)	ispB	261859..262830 (-)	972	WP_075321735.1	octaprenyl diphosphate synthase	-
JFL59_RS01385 (JFL59_01385)	rplU	263071..263382 (+)	312	WP_011608399.1	50S ribosomal protein L21	-
JFL59_RS01390 (JFL59_01390)	rpmA	263403..263660 (+)	258	WP_011608400.1	50S ribosomal protein L27	-
JFL59_RS01395 (JFL59_01395)	-	263796..264716 (+)	921	WP_012340377.1	DMT family transporter	-
JFL59_RS01400 (JFL59_01400)	cgtA	264726..265904 (+)	1179	WP_132995389.1	Obg family GTPase CgtA	-
JFL59_RS01405 (JFL59_01405)	ampD	266146..266715 (-)	570	WP_012340392.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
JFL59_RS01410 (JFL59_01410)	pilA	266838..267296 (+)	459	WP_075293673.1	prepilin peptidase-dependent pilin	Machinery gene
JFL59_RS01415 (JFL59_01415)	artP	267442..268179 (+)	738	WP_012340409.1	arginine ABC transporter ATP-binding protein ArtP	-
JFL59_RS01420 (JFL59_01420)	-	268197..268922 (+)	726	WP_012340415.1	transporter substrate-binding domain-containing protein	-
JFL59_RS01425 (JFL59_01425)	artQ	268927..269598 (+)	672	WP_132995387.1	arginine ABC transporter permease ArtQ	-
JFL59_RS01430 (JFL59_01430)	artM	269609..270292 (+)	684	WP_011608408.1	arginine ABC transporter permease ArtM	-
JFL59_RS01435 (JFL59_01435)	-	270398..270649 (-)	252	WP_233120535.1	DUF5339 domain-containing protein	-

Sequence

Protein

Download Length: 152 a.a. Molecular weight: 15875.12 Da Isoelectric Point: 8.4638

                                >NTDB_id=520999 JFL59_RS01410 WP_075293673.1 266838..267296(+) (pilA) [Histophilus somni strain ASc-MMNZ-VFA-078]

MKITYIFSSAKKGFTLIELMIVIAIVAILATIAIPSYQNYTKKAAITELLQASAPYRAEVELCVYNNDAPTNCNAGTNGI

QAAINTPKGKVKSVSVQGGAITVTGNGNLKDITYTLTPTGDASTGVTWSANCNNKADLFPAGFCSSTSTNSP

Nucleotide

Download Length: 459 bp

                                >NTDB_id=520999 JFL59_RS01410 WP_075293673.1 266838..267296(+) (pilA) [Histophilus somni strain ASc-MMNZ-VFA-078]

ATGAAAATAACCTATATTTTTTCATCAGCTAAAAAAGGATTTACTCTCATAGAACTGATGATCGTTATTGCTATTGTGGC

AATTCTTGCAACCATTGCAATTCCGTCATACCAAAATTATACAAAAAAAGCTGCAATTACAGAGCTGTTACAAGCTTCTG

CTCCTTATCGTGCAGAAGTTGAGCTATGCGTGTATAACAATGATGCACCGACAAATTGTAATGCTGGAACAAATGGAATT

CAAGCGGCAATCAATACACCAAAAGGTAAAGTAAAATCAGTTAGCGTGCAAGGTGGAGCCATTACTGTTACAGGGAATGG

AAATCTTAAAGATATTACTTATACCTTAACACCAACAGGCGATGCTTCAACCGGCGTTACTTGGAGTGCAAATTGCAATA

ATAAGGCCGATCTATTTCCTGCCGGATTTTGCTCTTCTACGTCTACAAACTCTCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(43-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	65.306	96.711	0.632
pilA	Haemophilus influenzae Rd KW20	63.265	96.711	0.612
pilA	Glaesserella parasuis strain SC1401	50.323	100	0.513
pilA	Ralstonia pseudosolanacearum GMI1000	35.119	100	0.388
pilA	Vibrio campbellii strain DS40M4	38.356	96.053	0.368

Detailed information NTG0520999