Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JFL49_RS03400 | Genome accession | NZ_CP066558 |
| Coordinates | 695441..695893 (+) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Histophilus somni strain ASc-MMNZ-VFA-070 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 687775..760688 | 695441..695893 | within | 0 |
Gene organization within MGE regions
Location: 687775..760688
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFL49_RS03365 (JFL49_03365) | - | 687903..688727 (+) | 825 | WP_012340861.1 | ParA family protein | - |
| JFL49_RS03370 (JFL49_03370) | dnaB | 688739..690100 (+) | 1362 | WP_012340860.1 | replicative DNA helicase | - |
| JFL49_RS03375 (JFL49_03375) | - | 690109..691755 (+) | 1647 | WP_012340859.1 | ParB family protein | - |
| JFL49_RS03380 (JFL49_03380) | - | 691748..692305 (+) | 558 | WP_012340858.1 | DUF2857 domain-containing protein | - |
| JFL49_RS03385 (JFL49_03385) | - | 692464..693654 (+) | 1191 | WP_014325837.1 | STY4528 family pathogenicity island replication protein | - |
| JFL49_RS03390 (JFL49_03390) | - | 693833..694591 (+) | 759 | WP_012340856.1 | PFL_4669 family integrating conjugative element protein | - |
| JFL49_RS03395 (JFL49_03395) | - | 694600..695085 (+) | 486 | WP_012340855.1 | DUF3158 family protein | - |
| JFL49_RS03400 (JFL49_03400) | ssb | 695441..695893 (+) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
| JFL49_RS03405 (JFL49_03405) | - | 696200..696388 (+) | 189 | WP_011200812.1 | hypothetical protein | - |
| JFL49_RS03410 (JFL49_03410) | - | 696429..696731 (+) | 303 | WP_011200813.1 | hypothetical protein | - |
| JFL49_RS03415 (JFL49_03415) | - | 696731..698041 (+) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| JFL49_RS03420 (JFL49_03420) | tet(H) | 698137..699339 (-) | 1203 | WP_198986592.1 | tetracycline efflux MFS transporter Tet(H) | - |
| JFL49_RS03425 (JFL49_03425) | tetR(H) | 699431..700054 (+) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| JFL49_RS03430 (JFL49_03430) | - | 700057..700575 (-) | 519 | WP_006248869.1 | hypothetical protein | - |
| JFL49_RS03435 (JFL49_03435) | - | 700624..700803 (-) | 180 | WP_006248870.1 | hypothetical protein | - |
| JFL49_RS03440 (JFL49_03440) | - | 700916..701047 (+) | 132 | WP_230588116.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JFL49_RS03445 (JFL49_03445) | - | 701137..702684 (-) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| JFL49_RS03450 (JFL49_03450) | - | 702700..703155 (-) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| JFL49_RS03455 (JFL49_03455) | - | 703337..703753 (-) | 417 | WP_316244961.1 | DUF6803 family protein | - |
| JFL49_RS03460 (JFL49_03460) | - | 703656..704423 (+) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| JFL49_RS03465 (JFL49_03465) | - | 704962..705672 (-) | 711 | WP_006248874.1 | hypothetical protein | - |
| JFL49_RS03470 (JFL49_03470) | - | 706149..706667 (+) | 519 | WP_006248876.1 | hypothetical protein | - |
| JFL49_RS03475 (JFL49_03475) | - | 706827..708878 (+) | 2052 | WP_012340838.1 | DNA topoisomerase III | - |
| JFL49_RS03480 (JFL49_03480) | - | 708939..709076 (-) | 138 | WP_155242642.1 | hypothetical protein | - |
| JFL49_RS03485 (JFL49_03485) | - | 709696..710127 (+) | 432 | WP_006248878.1 | STY4534 family ICE replication protein | - |
| JFL49_RS03490 (JFL49_03490) | - | 710233..710913 (+) | 681 | WP_006248879.1 | hypothetical protein | - |
| JFL49_RS03495 (JFL49_03495) | - | 710939..711346 (+) | 408 | WP_014325831.1 | hypothetical protein | - |
| JFL49_RS03500 (JFL49_03500) | - | 711426..711788 (+) | 363 | WP_006248881.1 | hypothetical protein | - |
| JFL49_RS03505 (JFL49_03505) | - | 711901..712161 (+) | 261 | WP_006248882.1 | hypothetical protein | - |
| JFL49_RS03510 (JFL49_03510) | - | 712320..712949 (+) | 630 | WP_006248884.1 | hypothetical protein | - |
| JFL49_RS03515 (JFL49_03515) | - | 712949..713722 (+) | 774 | WP_006248885.1 | TIGR03759 family integrating conjugative element protein | - |
| JFL49_RS03520 (JFL49_03520) | - | 713701..714471 (+) | 771 | WP_012340835.1 | hypothetical protein | - |
| JFL49_RS03525 (JFL49_03525) | - | 714474..714980 (+) | 507 | WP_012340834.1 | integrating conjugative element protein | - |
| JFL49_RS03530 (JFL49_03530) | traD | 714980..717181 (+) | 2202 | WP_014325830.1 | type IV conjugative transfer system coupling protein TraD | - |
| JFL49_RS03535 (JFL49_03535) | - | 717174..717527 (+) | 354 | WP_006248889.1 | hypothetical protein | - |
| JFL49_RS03540 (JFL49_03540) | - | 717524..718219 (+) | 696 | WP_012340831.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JFL49_RS03545 (JFL49_03545) | - | 718251..718622 (-) | 372 | WP_021265447.1 | hypothetical protein | - |
| JFL49_RS03550 (JFL49_03550) | - | 718821..719147 (+) | 327 | WP_006248892.1 | RAQPRD family integrative conjugative element protein | - |
| JFL49_RS03555 (JFL49_03555) | - | 719147..719380 (+) | 234 | WP_014325829.1 | DUF3262 family protein | - |
| JFL49_RS03560 (JFL49_03560) | - | 719395..719784 (+) | 390 | WP_006248894.1 | DUF2976 domain-containing protein | - |
| JFL49_RS03565 (JFL49_03565) | - | 719807..720172 (+) | 366 | WP_012340829.1 | TIGR03750 family conjugal transfer protein | - |
| JFL49_RS03570 (JFL49_03570) | - | 720176..720820 (+) | 645 | WP_012340828.1 | PFL_4703 family integrating conjugative element protein | - |
| JFL49_RS03575 (JFL49_03575) | - | 720820..721704 (+) | 885 | WP_012340827.1 | TIGR03749 family integrating conjugative element protein | - |
| JFL49_RS03580 (JFL49_03580) | - | 721716..723170 (+) | 1455 | WP_012340826.1 | TIGR03752 family integrating conjugative element protein | - |
| JFL49_RS03585 (JFL49_03585) | - | 723183..723581 (+) | 399 | WP_012340824.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JFL49_RS03590 (JFL49_03590) | - | 723584..726421 (+) | 2838 | WP_012340823.1 | conjugative transfer ATPase | - |
| JFL49_RS03595 (JFL49_03595) | - | 726421..726849 (+) | 429 | WP_012340822.1 | hypothetical protein | - |
| JFL49_RS03600 (JFL49_03600) | - | 726866..727156 (+) | 291 | WP_142783019.1 | hemophilus-specific protein | - |
| JFL49_RS03605 (JFL49_03605) | - | 727167..728639 (+) | 1473 | WP_012340820.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JFL49_RS03610 (JFL49_03610) | - | 728685..729026 (-) | 342 | WP_012340819.1 | hypothetical protein | - |
| JFL49_RS03615 (JFL49_03615) | tenpIN | 729047..729517 (-) | 471 | WP_012340818.1 | type III toxin-antitoxin system TenpIN family toxin | - |
| JFL49_RS03620 (JFL49_03620) | - | 729733..730161 (-) | 429 | WP_012340817.1 | hypothetical protein | - |
| JFL49_RS03625 (JFL49_03625) | - | 730182..732194 (-) | 2013 | WP_012340816.1 | integrating conjugative element protein | - |
| JFL49_RS03630 (JFL49_03630) | - | 732212..733153 (-) | 942 | WP_012340815.1 | TIGR03756 family integrating conjugative element protein | - |
| JFL49_RS03635 (JFL49_03635) | - | 733150..733593 (-) | 444 | WP_012340813.1 | TIGR03757 family integrating conjugative element protein | - |
| JFL49_RS03640 (JFL49_03640) | - | 733967..734320 (+) | 354 | WP_012340812.1 | hypothetical protein | - |
| JFL49_RS03645 (JFL49_03645) | - | 734392..734637 (+) | 246 | WP_012340811.1 | hypothetical protein | - |
| JFL49_RS03650 (JFL49_03650) | - | 734736..735131 (+) | 396 | WP_012340810.1 | hypothetical protein | - |
| JFL49_RS03655 (JFL49_03655) | - | 735209..736051 (+) | 843 | WP_012340809.1 | hypothetical protein | - |
| JFL49_RS03660 (JFL49_03660) | - | 736167..736574 (+) | 408 | WP_012340808.1 | hypothetical protein | - |
| JFL49_RS03665 (JFL49_03665) | - | 736819..737793 (+) | 975 | WP_012340807.1 | ArdC family protein | - |
| JFL49_RS03670 (JFL49_03670) | - | 737933..738679 (+) | 747 | WP_012340806.1 | hypothetical protein | - |
| JFL49_RS03675 (JFL49_03675) | - | 738752..739549 (+) | 798 | WP_014325828.1 | N-6 DNA methylase | - |
| JFL49_RS03680 (JFL49_03680) | mobH | 739977..741956 (+) | 1980 | WP_014325827.1 | MobH family relaxase | - |
| JFL49_RS03685 (JFL49_03685) | - | 742064..742876 (+) | 813 | WP_373419113.1 | tyrosine-type recombinase/integrase | - |
| JFL49_RS03690 (JFL49_03690) | - | 743054..743602 (+) | 549 | Protein_721 | IS30-like element ISApl1 family transposase | - |
| JFL49_RS03695 (JFL49_03695) | - | 743944..745437 (-) | 1494 | WP_087437258.1 | IS91-like element ISVsa3 family transposase | - |
| JFL49_RS03700 (JFL49_03700) | - | 745549..745854 (-) | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| JFL49_RS03705 (JFL49_03705) | floR | 745882..747096 (-) | 1215 | WP_014325824.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| JFL49_RS10090 | - | 747373..748257 (-) | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| JFL49_RS03715 (JFL49_03715) | - | 748288..748545 (-) | 258 | Protein_726 | IS91 family transposase | - |
| JFL49_RS03720 (JFL49_03720) | - | 748885..750177 (-) | 1293 | WP_014325823.1 | IS91 family transposase | - |
| JFL49_RS03725 (JFL49_03725) | sul2 | 750344..751186 (+) | 843 | WP_198986596.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| JFL49_RS03730 (JFL49_03730) | aph(3'')-Ib | 751355..752158 (+) | 804 | WP_075319815.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| JFL49_RS03735 (JFL49_03735) | - | 752158..752994 (+) | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| JFL49_RS10095 | - | 753092..753193 (-) | 102 | Protein_731 | IS5/IS1182 family transposase | - |
| JFL49_RS03740 (JFL49_03740) | - | 753330..754145 (+) | 816 | WP_000018321.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| JFL49_RS03745 (JFL49_03745) | - | 754299..755021 (-) | 723 | WP_021112540.1 | C45 family autoproteolytic acyltransferase/hydolase | - |
| JFL49_RS03755 (JFL49_03755) | - | 755062..756072 (+) | 1011 | WP_021112546.1 | hypothetical protein | - |
| JFL49_RS03760 (JFL49_03760) | - | 756173..757147 (+) | 975 | Protein_735 | IS30-like element ISApl1 family transposase | - |
| JFL49_RS03765 (JFL49_03765) | - | 757421..758320 (-) | 900 | WP_012340803.1 | tyrosine-type recombinase/integrase | - |
| JFL49_RS03770 (JFL49_03770) | - | 758470..758907 (+) | 438 | WP_012340802.1 | DNA-binding protein | - |
| JFL49_RS03775 (JFL49_03775) | - | 759639..760202 (-) | 564 | WP_223667064.1 | PBECR4 domain-containing protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=520830 JFL49_RS03400 WP_012340854.1 695441..695893(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-070]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=520830 JFL49_RS03400 WP_012340854.1 695441..695893(+) (ssb) [Histophilus somni strain ASc-MMNZ-VFA-070]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |