Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   A225_RS00635 Genome accession   NC_018106
Coordinates   136905..138425 (-) Length   506 a.a.
NCBI ID   WP_014837058.1    Uniprot ID   -
Organism   Klebsiella michiganensis E718     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 131905..143425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A225_RS00625 (A225_0129) hdfR 135603..136424 (-) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -
  A225_RS00630 (A225_0130) - 136543..136881 (+) 339 WP_004097464.1 DUF413 domain-containing protein -
  A225_RS00635 (A225_0131) comM 136905..138425 (-) 1521 WP_014837058.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A225_RS31035 ilvL 138775..138873 (+) 99 WP_001311244.1 ilv operon leader peptide -
  A225_RS00640 (A225_0133) ilvG 139013..140659 (+) 1647 WP_014227445.1 acetolactate synthase 2 catalytic subunit -
  A225_RS00645 (A225_0134) ilvM 140656..140913 (+) 258 WP_014837061.1 acetolactate synthase 2 small subunit -
  A225_RS00650 (A225_0135) - 140930..141859 (+) 930 WP_014837062.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55195.68 Da        Isoelectric Point: 8.3570

>NTDB_id=52083 A225_RS00635 WP_014837058.1 136905..138425(-) (comM) [Klebsiella michiganensis E718]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRKIVISNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHALANPLPEGEYTDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=52083 A225_RS00635 WP_014837058.1 136905..138425(-) (comM) [Klebsiella michiganensis E718]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCCCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGGGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAAGATTGTTATCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTCGAAGGTCGACATGCCCTGGCTAACCCCCTTCCAGAAGGGGAATATACGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAACGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGCACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCAATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCTGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCACTTCCGCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TCTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGATGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGGCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTGTCCCGAACTATTGCCGATATTGAGGCTGTCGAACGCATC
GAACGCCATCATTTGCAGGAGGCTCTCGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

48.185

98.024

0.472
  comM Legionella pneumophila strain ERS1305867

48.185

98.024

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.495

100

0.443

Multiple sequence alignment