Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   BN867_RS03275 Genome accession   NC_022529
Coordinates   617221..617604 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni 4031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 612221..622604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN867_RS03255 (BN867_06370) - 612300..614234 (-) 1935 WP_004309024.1 ribonuclease R family protein -
  BN867_RS03260 (BN867_06380) ilvC 614353..615375 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  BN867_RS03265 (BN867_06390) - 615379..616461 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  BN867_RS03270 (BN867_06400) dprA 616451..617224 (+) 774 WP_022552258.1 DNA-processing protein DprA Machinery gene
  BN867_RS03275 (BN867_06410) dprB 617221..617604 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  BN867_RS03280 (BN867_06420) - 617633..618472 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BN867_RS03285 (BN867_06430) msrA 618648..619145 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BN867_RS03290 (BN867_06440) ppa 619186..619704 (-) 519 WP_002855031.1 inorganic diphosphatase -
  BN867_RS03295 (BN867_06450) adk 619714..620292 (-) 579 WP_002855137.1 adenylate kinase -
  BN867_RS03300 (BN867_06460) aspS 620289..622040 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=52072 BN867_RS03275 WP_002852281.1 617221..617604(+) (dprB) [Campylobacter jejuni 4031]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=52072 BN867_RS03275 WP_002852281.1 617221..617604(+) (dprB) [Campylobacter jejuni 4031]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment