Detailed information NTG0519729

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: K1T74_RS05490
• Genome accession: NZ_CP080462
• Coordinates: 1161286..1162290 (+)
• Length: 334 a.a.
• NCBI ID: WP_000568493.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain ICDC-VC702
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1156286..1167290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1T74_RS05465	lpxH	1157113..1157853 (-)	741	WP_000557000.1	UDP-2,3-diacylglucosamine diphosphatase	-
K1T74_RS05470	-	1157894..1158388 (-)	495	WP_000631302.1	peptidylprolyl isomerase	-
K1T74_RS05475	cysS	1158534..1159913 (+)	1380	WP_000913180.1	cysteine--tRNA ligase	-
K1T74_RS05480	ruvC	1160001..1160522 (+)	522	WP_000111359.1	crossover junction endodeoxyribonuclease RuvC	-
K1T74_RS05485	ruvA	1160616..1161230 (+)	615	WP_000580350.1	Holliday junction branch migration protein RuvA	Machinery gene
K1T74_RS05490	ruvB	1161286..1162290 (+)	1005	WP_000568493.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
K1T74_RS05495	cydA	1162749..1164335 (+)	1587	WP_000568053.1	cytochrome ubiquinol oxidase subunit I	-
K1T74_RS05500	cydB	1164353..1165489 (+)	1137	WP_000460767.1	cytochrome d ubiquinol oxidase subunit II	-
K1T74_RS05505	cydX	1165502..1165609 (+)	108	WP_000270285.1	cytochrome bd-I oxidase subunit CydX	-
K1T74_RS05510	ybgE	1165602..1165919 (+)	318	WP_046126878.1	cyd operon protein YbgE	-
K1T74_RS05515	ybgC	1166088..1166495 (+)	408	WP_220106244.1	tol-pal system-associated acyl-CoA thioesterase	-
K1T74_RS05520	tolQ	1166485..1167168 (+)	684	WP_000123083.1	protein TolQ	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37317.74 Da
• Isoelectric Point: 5.1546

>NTDB_id=519729 K1T74_RS05490 WP_000568493.1 1161286..1162290(+) (ruvB) [Vibrio cholerae strain ICDC-VC702]
MIEADRLIAPISNHFKDEEVIDRAIRPRKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAHCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIIEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide

• Length: 1005 bp

>NTDB_id=519729 K1T74_RS05490 WP_000568493.1 1161286..1162290(+) (ruvB) [Vibrio cholerae strain ICDC-VC702]
ATGATAGAAGCCGATCGTTTAATCGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAGAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCAGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCATTGCGTGACCGATTTGGGATAGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCATTGCCTTGGGCTTTCTATGGATAGTGAAGGTGCGCTCGAAG
TCGCTCGCCGTGCTCGTGGTACACCGCGTATAGCCAATCGATTGTTACGCCGAGTAAGGGACTATGCGGAAGTCAAAGGC
GATGGACACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATAGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGCTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

• RuvB AAA lid domain (AAA_lid_4) (186-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.994	96.108	0.596
ruvB	Streptococcus pneumoniae TIGR4	60.252	94.91	0.572
ruvB	Streptococcus pneumoniae R6	60.252	94.91	0.572
ruvB	Streptococcus pneumoniae D39	60.252	94.91	0.572
ruvB	Synechocystis sp. PCC 6803	55.987	92.515	0.518
ruvB	Helicobacter pylori 26695	54.276	91.018	0.494