Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K1T74_RS05485 Genome accession   NZ_CP080462
Coordinates   1160616..1161230 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain ICDC-VC702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1155616..1166230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS05460 - 1155803..1157017 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  K1T74_RS05465 lpxH 1157113..1157853 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  K1T74_RS05470 - 1157894..1158388 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  K1T74_RS05475 cysS 1158534..1159913 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  K1T74_RS05480 ruvC 1160001..1160522 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  K1T74_RS05485 ruvA 1160616..1161230 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  K1T74_RS05490 ruvB 1161286..1162290 (+) 1005 WP_000568493.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K1T74_RS05495 cydA 1162749..1164335 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  K1T74_RS05500 cydB 1164353..1165489 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  K1T74_RS05505 cydX 1165502..1165609 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  K1T74_RS05510 ybgE 1165602..1165919 (+) 318 WP_046126878.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=519728 K1T74_RS05485 WP_000580350.1 1160616..1161230(+) (ruvA) [Vibrio cholerae strain ICDC-VC702]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=519728 K1T74_RS05485 WP_000580350.1 1160616..1161230(+) (ruvA) [Vibrio cholerae strain ICDC-VC702]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCCATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363