Detailed information NTG0519586

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K0T28_RS23905
• Genome accession: NZ_CP080405
• Coordinates: 5173367..5174239 (+)
• Length: 290 a.a.
• NCBI ID: WP_023119819.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PES_P749
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5168367..5179239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0T28_RS23890 (K0T28_23885)	pilA/pilAI	5169750..5170214 (-)	465	WP_023086642.1	pilin	Machinery gene
K0T28_RS23895 (K0T28_23890)	pilB	5170445..5172145 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K0T28_RS23900 (K0T28_23895)	pilC	5172149..5173366 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
K0T28_RS23905 (K0T28_23900)	pilD	5173367..5174239 (+)	873	WP_023119819.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
K0T28_RS23910 (K0T28_23905)	coaE	5174236..5174847 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
K0T28_RS23915 (K0T28_23910)	yacG	5174844..5175044 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
K0T28_RS23920 (K0T28_23915)	-	5175081..5175290 (-)	210	WP_003094660.1	hypothetical protein	-
K0T28_RS23925 (K0T28_23920)	-	5175396..5176085 (-)	690	WP_023119820.1	energy-coupling factor ABC transporter permease	-
K0T28_RS23930 (K0T28_23925)	-	5176082..5176552 (-)	471	WP_003094664.1	hypothetical protein	-
K0T28_RS23935 (K0T28_23930)	-	5176549..5176974 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
K0T28_RS23940 (K0T28_23935)	-	5177107..5177736 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
K0T28_RS23945 (K0T28_23940)	-	5177733..5178182 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
K0T28_RS23950 (K0T28_23945)	-	5178208..5178378 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31815.82 Da
• Isoelectric Point: 7.7068

>NTDB_id=519586 K0T28_RS23905 WP_023119819.1 5173367..5174239(+) (pilD) [Pseudomonas aeruginosa strain PES_P749]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=519586 K0T28_RS23905 WP_023119819.1 5173367..5174239(+) (pilD) [Pseudomonas aeruginosa strain PES_P749]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469