Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JEQ16_RS08350 Genome accession   NZ_CP066377
Coordinates   1633408..1634187 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ID-A01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628408..1639187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS08330 (JEQ16_08280) trmFO 1629095..1630402 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ16_RS08335 (JEQ16_08285) xerC 1630472..1631389 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  JEQ16_RS08340 (JEQ16_08290) hslV 1631405..1631950 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  JEQ16_RS08345 (JEQ16_08295) hslU 1631958..1633370 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  JEQ16_RS08350 (JEQ16_08300) codY 1633408..1634187 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JEQ16_RS08355 (JEQ16_08305) flgB 1634541..1634930 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  JEQ16_RS08360 (JEQ16_08310) flgC 1634930..1635382 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  JEQ16_RS08365 (JEQ16_08315) fliE 1635393..1635713 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  JEQ16_RS08370 (JEQ16_08320) fliF 1635756..1637366 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  JEQ16_RS08375 (JEQ16_08325) fliG 1637379..1638395 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  JEQ16_RS08380 (JEQ16_08330) fliH 1638388..1639143 (+) 756 WP_278071843.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=519586 JEQ16_RS08350 WP_003154263.1 1633408..1634187(+) (codY) [Bacillus velezensis strain ID-A01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=519586 JEQ16_RS08350 WP_003154263.1 1633408..1634187(+) (codY) [Bacillus velezensis strain ID-A01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471