Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JEQ16_RS07455 Genome accession   NZ_CP066377
Coordinates   1409413..1409697 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404413..1414697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS07435 (JEQ16_07385) - 1405659..1406567 (+) 909 WP_102421869.1 ketopantoate reductase family protein -
  JEQ16_RS07440 (JEQ16_07390) - 1406597..1407829 (-) 1233 WP_278071802.1 aminopeptidase -
  JEQ16_RS07445 (JEQ16_07395) - 1407930..1408064 (-) 135 WP_003154559.1 protein YkpC -
  JEQ16_RS07450 (JEQ16_07400) mreBH 1408136..1409143 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JEQ16_RS07455 (JEQ16_07405) abrB 1409413..1409697 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JEQ16_RS07460 (JEQ16_07410) - 1409870..1411174 (+) 1305 WP_077722152.1 ATP-binding protein -
  JEQ16_RS07465 (JEQ16_07415) - 1411176..1412003 (+) 828 WP_278071803.1 gamma-glutamylcyclotransferase family protein -
  JEQ16_RS07470 (JEQ16_07420) ktrC 1412044..1412709 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JEQ16_RS07475 (JEQ16_07425) ade 1412858..1414591 (+) 1734 WP_278071804.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=519584 JEQ16_RS07455 WP_024085249.1 1409413..1409697(+) (abrB) [Bacillus velezensis strain ID-A01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=519584 JEQ16_RS07455 WP_024085249.1 1409413..1409697(+) (abrB) [Bacillus velezensis strain ID-A01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543