Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JEQ16_RS08320 Genome accession   NZ_CP066377
Coordinates   1625874..1626773 (+) Length   299 a.a.
NCBI ID   WP_278071842.1    Uniprot ID   -
Organism   Bacillus velezensis strain ID-A01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1620874..1631773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ16_RS08300 (JEQ16_08250) - 1621565..1623268 (+) 1704 WP_278071840.1 glycosyl transferase -
  JEQ16_RS08305 (JEQ16_08255) - 1623265..1623546 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  JEQ16_RS08310 (JEQ16_08260) sucC 1623721..1624878 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  JEQ16_RS08315 (JEQ16_08265) sucD 1624907..1625809 (+) 903 WP_278071841.1 succinate--CoA ligase subunit alpha -
  JEQ16_RS08320 (JEQ16_08270) dprA 1625874..1626773 (+) 900 WP_278071842.1 DNA-processing protein DprA Machinery gene
  JEQ16_RS08325 (JEQ16_08275) topA 1626955..1629030 (+) 2076 WP_025649465.1 type I DNA topoisomerase -
  JEQ16_RS08330 (JEQ16_08280) trmFO 1629095..1630402 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JEQ16_RS08335 (JEQ16_08285) xerC 1630472..1631389 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32892.04 Da        Isoelectric Point: 8.1563

>NTDB_id=519585 JEQ16_RS08320 WP_278071842.1 1625874..1626773(+) (dprA) [Bacillus velezensis strain ID-A01]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEEIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKLGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=519585 JEQ16_RS08320 WP_278071842.1 1625874..1626773(+) (dprA) [Bacillus velezensis strain ID-A01]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGGAGAAAACTCGGGATTGTAGGAACGCGGAAACCGACAGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371