Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JFB93_RS19575 Genome accession   NZ_CP066315
Coordinates   4290744..4292270 (+) Length   508 a.a.
NCBI ID   WP_129466660.1    Uniprot ID   -
Organism   Providencia rettgeri strain R39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4285744..4297270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFB93_RS19555 (JFB93_19555) - 4287172..4288098 (-) 927 WP_042845908.1 branched-chain amino acid transaminase -
  JFB93_RS19560 (JFB93_19560) ilvM 4288110..4288379 (-) 270 WP_042845909.1 acetolactate synthase 2 small subunit -
  JFB93_RS19565 (JFB93_19565) ilvG 4288376..4290022 (-) 1647 WP_048605782.1 acetolactate synthase 2 catalytic subunit -
  JFB93_RS19570 (JFB93_19570) - 4290157..4290258 (-) 102 WP_071548712.1 IlvGEDA operon leader peptide -
  JFB93_RS19575 (JFB93_19575) comM 4290744..4292270 (+) 1527 WP_129466660.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JFB93_RS19580 (JFB93_19580) - 4292348..4292686 (-) 339 WP_042845913.1 DUF413 domain-containing protein -
  JFB93_RS19585 (JFB93_19585) hdfR 4292799..4293656 (+) 858 WP_042845915.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55772.12 Da        Isoelectric Point: 8.7395

>NTDB_id=519287 JFB93_RS19575 WP_129466660.1 4290744..4292270(+) (comM) [Providencia rettgeri strain R39]
MTLAIVYTRASIGMEAPLVTVEAHISNGLPGLTLVGLPETAVKEARDRVRSALLNSGFEYPAKKMTVNLAPADLPKESGR
YDLAIAIAILASSGQIPNETLNQHEFLGELALSGLIRYVNSAIPAAQSALEQRRVLILSIENQHQLSLLADNSVHFATSL
LELCHFLHGKQVLASNQQIHEAPSSARYEGDINDIIGQEQGKRALEICATGGHNLLLLGPPGTGKTMLASRLMTLLPPLT
PQEALEVASLYSLTETTRDKVNWPIRPFRTPHHSTSIAALIGGGSLPKPGEISLAHNGILFLDELPEFSRSVLDSLREPL
ESKRVSISRAKAKVCYPANFQLIAALNPSPTGHYQGEMSRSSPARILRYLSHISGPFLDRFDISIEIPLLPIGSLSNQNY
QGETSEQVRQRVITARNRQLERAGKINNLLTSRETTQFCPLKAKDALFLEHALNKLGLSIRAWHRVLRVSRTIADLNASE
HIERAHLLEALGYRTMDKLLLHLQKQVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=519287 JFB93_RS19575 WP_129466660.1 4290744..4292270(+) (comM) [Providencia rettgeri strain R39]
ATGACATTGGCGATTGTTTATACTAGAGCATCGATTGGCATGGAAGCTCCACTTGTCACTGTTGAAGCTCATATTAGTAA
TGGGCTTCCTGGCCTAACACTTGTTGGTCTCCCTGAAACCGCCGTCAAAGAAGCTAGGGATCGGGTAAGAAGTGCTTTAC
TAAATAGTGGGTTTGAATATCCCGCTAAAAAAATGACCGTAAATTTAGCGCCTGCAGATTTACCAAAAGAAAGTGGGCGC
TACGACCTTGCAATTGCAATTGCTATTCTTGCATCATCTGGACAAATTCCTAATGAAACATTAAATCAACATGAGTTTTT
AGGTGAACTGGCATTATCTGGTCTGATACGTTACGTCAACAGTGCCATTCCTGCAGCACAATCAGCATTAGAACAACGTC
GAGTATTAATACTTTCAATTGAAAATCAGCACCAATTAAGCTTACTCGCTGACAATAGCGTCCATTTTGCAACATCTTTG
TTAGAACTTTGCCACTTCTTACATGGTAAACAGGTCTTAGCCAGTAACCAACAAATCCACGAAGCCCCCTCATCGGCTCG
ATATGAAGGTGATATCAATGATATTATTGGGCAAGAACAAGGAAAACGTGCATTAGAAATTTGCGCCACAGGTGGTCATA
ATTTACTTCTACTAGGCCCCCCTGGTACAGGAAAAACAATGCTAGCCAGCAGGTTAATGACTTTATTGCCTCCATTAACG
CCTCAGGAGGCACTAGAGGTCGCTTCATTATATAGCCTGACTGAAACCACTCGTGATAAAGTGAATTGGCCTATAAGGCC
TTTTAGAACGCCTCATCACAGCACATCAATAGCTGCATTAATCGGCGGGGGCTCTCTTCCAAAACCTGGCGAAATCTCTC
TTGCTCATAATGGCATTTTATTTTTAGATGAATTACCTGAATTCAGTCGTTCTGTCCTTGATTCATTAAGAGAACCTCTT
GAGTCAAAAAGAGTGAGTATTTCTCGTGCAAAAGCAAAAGTTTGCTACCCTGCAAACTTTCAACTCATTGCTGCACTTAA
TCCAAGTCCAACAGGTCACTACCAAGGTGAAATGAGCCGCTCATCTCCCGCCCGCATATTGCGCTATCTTTCGCATATAT
CAGGTCCTTTTCTAGATAGATTTGATATTTCGATTGAAATACCATTATTACCTATCGGCTCATTAAGCAATCAAAATTAT
CAAGGTGAAACTAGTGAACAAGTCAGGCAAAGAGTGATCACGGCTAGAAATAGGCAACTTGAGCGTGCAGGAAAAATAAA
TAATTTACTCACGTCGAGAGAAACCACACAATTTTGCCCGCTAAAGGCTAAAGATGCGTTATTCTTAGAGCATGCGTTAA
ATAAGTTAGGGCTTTCTATTCGGGCTTGGCACAGGGTATTAAGGGTTTCTAGGACCATTGCCGATCTTAATGCATCTGAG
CATATAGAACGGGCACATTTATTAGAAGCCCTTGGGTACAGGACAATGGATAAGTTATTGCTTCATTTGCAAAAACAAGT
AAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.827

100

0.608
  comM Glaesserella parasuis strain SC1401

59.921

100

0.6
  comM Haemophilus influenzae Rd KW20

59.763

99.803

0.596
  comM Vibrio campbellii strain DS40M4

58.546

100

0.587
  comM Legionella pneumophila str. Paris

47.451

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.451

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.431