Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GKQ51_RS03455 Genome accession   NZ_CP066310
Coordinates   718067..719131 (+) Length   354 a.a.
NCBI ID   WP_198867243.1    Uniprot ID   A0AAQ0BZW5
Organism   Azotobacter chroococcum strain HR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 713067..724131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ51_RS03445 (GKQ51_03445) - 714092..715360 (+) 1269 WP_198867241.1 malic enzyme-like NAD(P)-binding protein -
  GKQ51_RS03450 (GKQ51_03450) - 715421..717886 (-) 2466 WP_198867242.1 penicillin-binding protein 1A -
  GKQ51_RS03455 (GKQ51_03455) comM 718067..719131 (+) 1065 WP_198867243.1 pilus assembly protein PilM Machinery gene
  GKQ51_RS03460 (GKQ51_03460) - 719132..719788 (+) 657 WP_198867244.1 PilN domain-containing protein -
  GKQ51_RS03465 (GKQ51_03465) pilO 719785..720408 (+) 624 WP_089167131.1 type 4a pilus biogenesis protein PilO -
  GKQ51_RS03470 (GKQ51_03470) pilP 720405..720929 (+) 525 WP_089167132.1 type 4a pilus biogenesis lipoprotein PilP -
  GKQ51_RS03475 (GKQ51_03475) pilQ 720983..723100 (+) 2118 WP_198867245.1 type IV pilus secretin PilQ Machinery gene
  GKQ51_RS03480 (GKQ51_03480) aroK 723105..723623 (+) 519 WP_198867246.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37786.60 Da        Isoelectric Point: 4.7989

>NTDB_id=519239 GKQ51_RS03455 WP_198867243.1 718067..719131(+) (comM) [Azotobacter chroococcum strain HR1]
MLGLFNKKAGSLLGIDISSTTVKLIELSRSGNRYRVEAYAVEPLPANAVVEKNIVDLDGVGQTLSKVLAKAKTGTRNAAV
AVAGSVVITKTVEMDAGLSEDEMETQLKLEADQYIPYPLEEVAIDFEIQGPLPRSPGRAEVLLAACRKENVEAREAVLAL
AGLTAKVVDVEAYAMERACGLLVDQLGGDPAGLIVAVVDIGATMMTLSVMHRGRTLYTREQLFGGKQLTDEIQRRYGLSM
AEAGLAKKKGGLPIDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQYNQVDYILLAGGTSSLPGLDQLIQQKTGTRTLVANP
FAEMALSPKVNASALVSDAPAMMVACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=519239 GKQ51_RS03455 WP_198867243.1 718067..719131(+) (comM) [Azotobacter chroococcum strain HR1]
GTGCTAGGGCTCTTCAACAAGAAAGCGGGTTCATTACTGGGGATCGATATTAGTTCGACCACGGTCAAGCTTATCGAATT
GAGTCGTTCAGGTAACCGTTACCGGGTAGAGGCCTACGCTGTCGAGCCGCTTCCTGCCAATGCCGTCGTCGAGAAGAACA
TTGTCGATCTCGATGGTGTCGGCCAGACCTTGAGCAAGGTGCTGGCCAAGGCCAAGACCGGAACCAGGAACGCGGCCGTG
GCCGTGGCGGGTTCCGTGGTGATTACCAAGACCGTCGAGATGGATGCCGGGCTTTCCGAGGATGAAATGGAAACCCAGTT
GAAGCTCGAGGCCGACCAATACATTCCCTATCCCCTCGAGGAAGTGGCGATCGACTTCGAGATCCAGGGGCCGCTGCCAC
GCAGCCCCGGGCGCGCCGAGGTGCTGCTCGCCGCCTGCCGCAAGGAGAACGTCGAGGCCCGCGAGGCGGTGCTGGCACTG
GCCGGCCTGACGGCCAAGGTCGTCGATGTCGAGGCCTATGCCATGGAGCGCGCCTGCGGCCTGCTGGTCGACCAGTTGGG
CGGCGATCCGGCGGGGTTGATCGTAGCTGTCGTCGATATCGGCGCGACCATGATGACGCTCAGCGTAATGCATCGAGGTC
GCACCCTCTATACCCGCGAGCAGCTGTTCGGCGGCAAGCAGCTCACCGACGAAATCCAGCGCCGCTATGGCCTGTCCATG
GCCGAAGCCGGTCTGGCCAAAAAGAAAGGCGGACTTCCAATAGACTACGACAGCGAGGTTTTGCAGCCGTTCAAGGACGC
TGTCGTACAGCAGGTTTCCCGTTCGCTGCAGTTCTTTTTCGCGGCGGGCCAGTACAACCAGGTCGACTACATCCTGCTGG
CGGGAGGGACCTCTTCCCTGCCGGGACTTGATCAACTGATCCAGCAGAAGACCGGGACCCGGACGCTGGTGGCCAACCCG
TTTGCCGAGATGGCGTTGAGTCCCAAGGTGAATGCCTCGGCGCTGGTCAGCGATGCTCCAGCCATGATGGTTGCCTGCGG
TCTGGCGATGAGGAGTTTCGATTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

54.648

100

0.548
  pilM Acinetobacter baumannii D1279779

54.366

100

0.545
  comM Acinetobacter baylyi ADP1

52.394

100

0.525
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449