Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JET17_RS01170 Genome accession   NZ_CP066306
Coordinates   248636..250126 (-) Length   496 a.a.
NCBI ID   WP_012312183.1    Uniprot ID   -
Organism   Pseudomonas putida strain BR-PH17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243636..255126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JET17_RS01150 (JET17_01150) - 245142..246134 (+) 993 WP_012312179.1 response regulator -
  JET17_RS01155 (JET17_01155) - 246131..246505 (+) 375 WP_012312180.1 response regulator transcription factor -
  JET17_RS01160 (JET17_01160) - 246709..248016 (-) 1308 WP_012312181.1 Nramp family divalent metal transporter -
  JET17_RS01165 (JET17_01165) - 248236..248496 (-) 261 WP_012312182.1 DUF2790 domain-containing protein -
  JET17_RS01170 (JET17_01170) comM 248636..250126 (-) 1491 WP_012312183.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JET17_RS01175 (JET17_01175) - 250381..252408 (+) 2028 WP_012312184.1 DUF4034 domain-containing protein -
  JET17_RS01180 (JET17_01180) - 252425..252688 (-) 264 WP_012312185.1 accessory factor UbiK family protein -
  JET17_RS01185 (JET17_01185) glnK 253052..253390 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  JET17_RS01190 (JET17_01190) - 253438..254772 (+) 1335 WP_012312186.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53110.87 Da        Isoelectric Point: 7.5644

>NTDB_id=519181 JET17_RS01170 WP_012312183.1 248636..250126(-) (comM) [Pseudomonas putida strain BR-PH17]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPVATLTDIECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHKPLDSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPCG
ETSADVAARVAEAREVQHRRQGCANAFLDLEGLRRHCELCAADQAWLESACERLTLSLRAAHRLLKVARTLADLEGASTI
ARAHLAEALQYRPGSH

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=519181 JET17_RS01170 WP_012312183.1 248636..250126(-) (comM) [Pseudomonas putida strain BR-PH17]
ATGTCCCTTGCCCTCGTCCACAGCCGCGCCCAGGTTGGCGTGCAGGCACCTGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCACCTCACCCTGGTCGGCCTGCCCGAAACCACCGTCAAGGAAAGCAAAGACAGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGAACTACCCGCAAAGGCGCATCACCCAAAACCTGGCACCGGCAGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCTGACGGCCAAGTGCCGGTGGCCACGTTGACCGACATCGAATGCCT
GGGCGAGCTGGCGCTTTCGGGCAAGCTGCGTCCGGTGCAGGGCGTGCTGCCTGCTGCACTGGCGGCGCGGGAGGCTGGCC
GGGCACTGGTGGTGCCGCGGGAAAACGCCGAAGAGGCGAGCCTGGCGGGTGGGCTGGTGGTGTACGCCGTGGGGCACCTG
CTGGAACTGGTCGCGCACCTCAACGGCCAGGTGCCGCTGCCTCCCTTTGCCGCCAACGGTCTGTTGCTGCACAGCCGCCC
TTACCCCGACCTCAGCGAGGTGCAGGGCCAGGTGGCCGCCAAGCGTGCCTTGCTGCTGGCGGCTTCAGGTGCGCATAACC
TGCTGTTCACGGGGCCGCCCGGCACGGGCAAGACACTACTCGCCAGCCGCCTGCCCGGTCTGCTGCCGCCGCTGGATGAG
CATGAAGCGCTGGAAGTGGCAGCCATCCAGTCGGTAAGCGGGCACAAACCGCTTGATAGCTGGCCGCAACGGCCGTTTCG
CCATCCGCACCACTCAGCGTCCGGGCCCGCGCTGGTAGGCGGAAGCAGCCGGCCACAGCCAGGTGAAATCACCCTGGCGC
ACCATGGGGTACTGTTTCTGGATGAGCTTCCGGAGTTCGAGCGCCGTGTACTTGAGGTGCTTCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTGCCCGGGCACGGGACAAAGTACGCTTTCCGGCGCGCTTCCAACTGGTGGCGGCCATGAACCCGTG
CCCTTGCGGTTACCTGGGCGACCCCACGGGCCGCTGCCGCTGCAGCACCGAACAGATCCAGCGCTACCGCAACAAGCTTT
CCGGCCCGCTACTGGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAACCACCACGCTCAACAATCAACCTTGCGGC
GAGACAAGTGCCGATGTGGCGGCCCGGGTGGCCGAGGCGCGCGAGGTGCAGCACCGGCGACAAGGCTGTGCCAATGCGTT
TCTGGACCTTGAGGGGCTACGACGGCACTGTGAATTGTGCGCTGCCGACCAGGCCTGGCTGGAGAGTGCCTGCGAGCGCC
TGACGCTTTCCCTGCGCGCCGCACACAGGCTGTTGAAGGTAGCACGCACGCTGGCCGACCTGGAGGGGGCCAGCACGATT
GCCAGGGCGCATCTGGCCGAAGCCCTGCAGTACCGGCCGGGAAGTCATTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.554
  comM Glaesserella parasuis strain SC1401

54.183

100

0.548
  comM Legionella pneumophila str. Paris

49

100

0.494
  comM Legionella pneumophila strain ERS1305867

49

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.478