Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   IGS65_RS09080 Genome accession   NZ_CP066294
Coordinates   1866528..1868825 (+) Length   765 a.a.
NCBI ID   WP_192072398.1    Uniprot ID   A0AAX1K2G9
Organism   Streptococcus mutans strain 27-3     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861528..1873825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS09060 (IGS65_009060) serS 1861834..1863114 (-) 1281 WP_002263348.1 serine--tRNA ligase -
  IGS65_RS09065 (IGS65_009065) - 1863638..1864711 (+) 1074 WP_002286661.1 acyltransferase -
  IGS65_RS09070 (IGS65_009070) - 1864948..1865316 (-) 369 WP_002263350.1 DUF956 family protein -
  IGS65_RS09075 (IGS65_009075) - 1865636..1865989 (+) 354 WP_192072399.1 hypothetical protein -
  IGS65_RS09080 (IGS65_009080) comA/nlmT 1866528..1868825 (+) 2298 WP_192072398.1 peptide cleavage/export ABC transporter Regulator
  IGS65_RS09085 (IGS65_009085) - 1869201..1870127 (-) 927 WP_002265465.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  IGS65_RS09090 (IGS65_009090) - 1870142..1870960 (-) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  IGS65_RS09095 (IGS65_009095) - 1870995..1871987 (-) 993 WP_002263355.1 PTS sugar transporter subunit IIB -
  IGS65_RS09100 (IGS65_009100) - 1872864..1873334 (-) 471 WP_002263356.1 hypothetical protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 86771.28 Da        Isoelectric Point: 8.1540

>NTDB_id=519166 IGS65_RS09080 WP_192072398.1 1866528..1868825(+) (comA/nlmT) [Streptococcus mutans strain 27-3]
MNTFSYLLLTVVLVLLVNLFLEFIKYFFKTTPAMNKVNSKKTSNFLWSRTRTRRFKFVPQVDNRDCGPAALASIAKHYGS
YYSLVHLRELTKTDRQGTTALGIIEAAKNIGFETYSLDADMSLFNYDDLIYPFIVHVVKNKRLQHYYVVYDDEGDSLIIG
DPDPSVKVIRMSKERFQHEWTGVAIFISPKDDYQPQKDKRRGLTSFIPSFLKQKSLLFYIIMASLIITLIEIIGAFYFQV
MLDEYIPSQKISTLGFITLGLIITYVAQQIIAFAKEYLLIILGQRLVIDVILTYIKHIFILPMSFFSTRRTGEITSRFTD
ANQIIDAVASTIFSIFLDISMVFIVGGVLLIQNVVLFFLALLCVPIYIIIVFAFMKMFGYLNYEVMESNAIMSSSVIEDI
NGIETIKSLTSEEVSYQRIDKEFVDFLEKSFRLHKYGVIQVSIKTAAKLILNIVILWYGARLVMTGKISVGQMIAFNVLL
GYFSSPIENMINLQIKLQSARIANTRLNEVYLVDSEFENNGELSEGSFLDGDISFEKLSYKYGYGRDTLSDINLTIKKGS
KVSLVGASGSGKTTLVKMIVNFYEPIQGLIRLNGYDLKDIDKTVLRQHINYLPQQAYIFSGTIMDNLILGAKKDINQEDI
IRACEIAEIHSDIEQMPLGYQTELSDSTGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVNNLMAMANKTI
VFVAHRLSIAQRTDRIIVMDQGKIVEEGSHKELLAHKGFYYKLFN

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=519166 IGS65_RS09080 WP_192072398.1 1866528..1868825(+) (comA/nlmT) [Streptococcus mutans strain 27-3]
ATGAACACATTTTCTTATCTTCTTTTGACTGTAGTTTTAGTATTATTAGTCAATTTATTCTTAGAATTTATAAAATACTT
TTTTAAAACAACTCCAGCAATGAATAAGGTAAATTCTAAGAAAACTTCAAATTTTTTATGGAGTCGAACTCGAACTAGAC
GTTTTAAATTTGTACCACAAGTCGATAATAGAGACTGTGGCCCGGCTGCTCTAGCCTCTATTGCCAAACATTATGGTTCA
TATTATTCCTTGGTTCATCTGCGTGAACTTACAAAGACAGATCGACAAGGCACCACAGCATTAGGCATCATTGAAGCTGC
CAAAAATATTGGATTTGAAACTTACTCGCTAGATGCTGATATGTCTTTATTTAATTATGATGACCTTATTTACCCTTTTA
TTGTTCACGTTGTTAAAAATAAACGTCTTCAACATTACTATGTTGTTTATGACGATGAAGGAGATAGTCTAATCATCGGA
GATCCAGATCCTTCTGTCAAAGTTATTCGCATGTCTAAGGAGAGATTTCAGCATGAATGGACAGGTGTAGCTATCTTCAT
TTCTCCAAAGGATGATTATCAGCCTCAAAAAGATAAAAGAAGAGGATTAACAAGTTTCATACCTTCTTTTTTAAAGCAAA
AGAGTCTCTTGTTCTATATTATAATGGCGAGTTTAATCATTACTTTAATAGAAATTATTGGAGCTTTTTATTTCCAAGTA
ATGCTGGATGAGTATATTCCCAGTCAAAAAATTTCAACTTTAGGCTTTATCACTTTAGGATTGATAATAACTTATGTTGC
CCAACAAATAATAGCTTTTGCAAAAGAGTACTTATTAATTATATTAGGACAAAGGCTGGTAATTGATGTTATACTTACTT
ATATTAAGCACATTTTTATTCTTCCGATGTCTTTTTTTTCGACAAGACGAACGGGAGAAATCACATCTCGCTTCACTGAT
GCCAATCAAATTATTGATGCTGTGGCGTCAACAATTTTTTCTATTTTCTTAGACATTTCGATGGTATTTATAGTTGGTGG
AGTATTATTAATTCAAAATGTCGTTTTATTTTTCCTAGCCTTGCTCTGCGTTCCTATCTACATTATCATTGTTTTTGCAT
TTATGAAAATGTTTGGTTACTTAAACTATGAGGTAATGGAAAGTAATGCGATAATGTCTTCATCTGTTATTGAGGATATT
AATGGAATAGAAACTATCAAATCTTTGACGAGTGAAGAAGTTAGCTATCAGAGAATTGACAAGGAATTTGTTGATTTTTT
AGAGAAATCTTTTAGGCTGCATAAGTATGGAGTTATTCAAGTCTCAATTAAAACTGCTGCAAAGCTAATTTTGAATATCG
TTATTCTATGGTATGGAGCACGATTGGTTATGACCGGGAAAATTTCAGTGGGTCAAATGATTGCTTTTAACGTGCTTTTA
GGATATTTTTCAAGCCCAATTGAAAATATGATTAATTTACAAATTAAGCTCCAATCAGCCCGCATAGCTAATACGCGTCT
CAATGAAGTCTATCTAGTCGATTCTGAGTTTGAAAATAATGGGGAGCTTTCAGAAGGCAGCTTTTTGGATGGGGATATCT
CTTTTGAAAAGTTATCTTACAAGTATGGTTATGGTCGTGATACTCTGTCAGATATCAATCTAACTATTAAAAAAGGTTCA
AAGGTCAGTCTGGTCGGAGCCTCTGGTTCTGGTAAAACGACTCTTGTCAAGATGATTGTCAATTTTTATGAACCTATACA
GGGTCTTATCCGTCTTAATGGTTATGACCTAAAAGATATAGATAAGACTGTTTTACGCCAGCATATTAACTATCTCCCCC
AACAAGCTTATATCTTTAGTGGTACCATCATGGATAATCTGATCTTGGGAGCCAAGAAAGACATTAATCAGGAAGATATT
ATTCGAGCCTGTGAAATTGCTGAGATTCATTCAGACATTGAACAAATGCCGCTGGGGTACCAGACTGAGTTATCTGATAG
TACTGGAGTTTCCGGTGGCCAAAAGCAGCGGATTGCCTTGGCTCGCGCTCTCTTAACCCAAGCTCCAGTTTTGATTTTGG
ATGAAGCCACCAGCAGTCTGGATGTCCTGACTGAAAAGAAAATCGTCAACAACCTCATGGCCATGGCCAATAAGACTATT
GTTTTTGTGGCACACCGTTTGAGTATTGCTCAACGGACAGACCGAATTATTGTTATGGATCAAGGTAAGATTGTGGAAGA
AGGTAGCCATAAGGAACTTTTAGCTCATAAAGGCTTCTACTACAAGCTGTTTAACTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(55-191)

ABC transporter transmembrane region (ABC_membrane)

(217-486)

ABC transporter (ABC_tran)

(549-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.523

98.954

0.718
  comA Streptococcus mitis NCTC 12261

61.972

92.81

0.575
  comA Streptococcus pneumoniae Rx1

61.127

92.81

0.567
  comA Streptococcus pneumoniae D39

61.127

92.81

0.567
  comA Streptococcus pneumoniae R6

61.127

92.81

0.567
  comA Streptococcus mitis SK321

61.127

92.81

0.567
  comA Streptococcus pneumoniae TIGR4

60.845

92.81

0.565
  comA Streptococcus gordonii str. Challis substr. CH1

59.524

93.333

0.556