Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JDY60_RS08295 Genome accession   NZ_CP066172
Coordinates   1724891..1725553 (+) Length   220 a.a.
NCBI ID   WP_200370624.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719891..1730553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS08270 (JDY60_08270) tsf 1720279..1721319 (+) 1041 WP_000808056.1 translation elongation factor Ts -
  JDY60_RS08275 (JDY60_08275) cysK 1721423..1722349 (-) 927 WP_000158480.1 cysteine synthase A -
  JDY60_RS08280 (JDY60_08280) - 1722446..1722889 (-) 444 WP_200370619.1 PH domain-containing protein -
  JDY60_RS08285 (JDY60_08285) - 1722904..1723539 (-) 636 WP_200370621.1 YigZ family protein -
  JDY60_RS08290 (JDY60_08290) comFA/cflA 1723596..1724894 (+) 1299 WP_200370622.1 DEAD/DEAH box helicase Machinery gene
  JDY60_RS08295 (JDY60_08295) comFC/cflB 1724891..1725553 (+) 663 WP_200370624.1 ComF family protein Machinery gene
  JDY60_RS08300 (JDY60_08300) hpf 1725633..1726181 (+) 549 WP_000599114.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  JDY60_RS08305 (JDY60_08305) - 1726263..1727441 (+) 1179 WP_200370626.1 acetyl-CoA C-acetyltransferase -
  JDY60_RS08310 (JDY60_08310) - 1727598..1729571 (+) 1974 WP_000739978.1 DHH family phosphoesterase -
  JDY60_RS08315 (JDY60_08315) rplI 1729568..1730020 (+) 453 WP_000864211.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24877.86 Da        Isoelectric Point: 8.4733

>NTDB_id=518088 JDY60_RS08295 WP_200370624.1 1724891..1725553(+) (comFC/cflB) [Streptococcus oralis strain SF100]
MNCLLCGQTTKSELTFSSLFLFKDDCSYLCSACASSFERIGENYCPNCMKTGMSTKCKDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLADELKKYRGYQFVSIPLSPGRLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=518088 JDY60_RS08295 WP_200370624.1 1724891..1725553(+) (comFC/cflB) [Streptococcus oralis strain SF100]
ATGAACTGTTTATTATGTGGCCAGACTACAAAGAGTGAGCTGACTTTTAGCAGTCTCTTCCTTTTTAAGGATGATTGCAG
TTATCTTTGCTCAGCTTGTGCTTCTAGTTTTGAGAGGATTGGTGAGAATTATTGCCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTAAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCCATGAAAGACTTTTTCAGTCGATATAAATTTGATGGCGATTTTTTGCTTAGAAAAGTTTTCGCTTCTGTTCTTGCTGA
TGAGCTGAAAAAGTATAGAGGATATCAATTTGTGTCGATTCCCCTAAGTCCTGGAAGATTACTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTCAAAGATATATTAGGAAAAAGAGAAGAGAGTGCTAGTTCTTCT
AAAAGCCGTTTAGAAAGGTTGGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCCAAGAAGATTTTGCT
GATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(179-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

77.727

100

0.777
  comFC/cflB Streptococcus mitis SK321

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae TIGR4

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae Rx1

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae D39

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae R6

76.818

100

0.768