Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JDY60_RS04340 Genome accession   NZ_CP066172
Coordinates   901525..902481 (-) Length   318 a.a.
NCBI ID   WP_200371523.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896525..907481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS04320 (JDY60_04320) ftsW 896569..897792 (-) 1224 WP_200371519.1 cell division peptidoglycan polymerase FtsW -
  JDY60_RS04325 (JDY60_04325) prsA 897980..898921 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  JDY60_RS04330 (JDY60_04330) - 898989..899702 (-) 714 WP_200371521.1 O-methyltransferase -
  JDY60_RS04335 (JDY60_04335) pepF 899704..901506 (-) 1803 WP_200371522.1 oligoendopeptidase F Regulator
  JDY60_RS04340 (JDY60_04340) coiA 901525..902481 (-) 957 WP_200371523.1 competence protein CoiA Machinery gene
  JDY60_RS04345 (JDY60_04345) - 902558..903706 (-) 1149 WP_200371525.1 DUF1887 family protein -
  JDY60_RS04350 (JDY60_04350) tehB 903884..904744 (-) 861 WP_200371527.1 SAM-dependent methyltransferase TehB -
  JDY60_RS04355 (JDY60_04355) smpB 904759..905226 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37799.36 Da        Isoelectric Point: 9.5729

>NTDB_id=518045 JDY60_RS04340 WP_200371523.1 901525..902481(-) (coiA) [Streptococcus oralis strain SF100]
MFVARDAKGNLVNSLEKDVTKQPYTCPACGGGLRLRRGQSIRTHFAHERLRDCMAIFENESPEHLGNKEALYHWVKKDSQ
VALEYSLPEIQQVADVLVNGKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
FVWELDLKRKILRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLPRFAVVQDSTICHYIRQQLYYQTPYWM
KKQEEAYHQGDNLLNHQLDDWYPQVRPIESGDFLQIETDLASYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=518045 JDY60_RS04340 WP_200371523.1 901525..902481(-) (coiA) [Streptococcus oralis strain SF100]
ATGTTTGTAGCTAGAGATGCCAAGGGGAATTTGGTGAATTCACTCGAAAAAGACGTAACCAAGCAGCCCTACACTTGTCC
AGCCTGTGGTGGCGGGCTACGATTACGCCGAGGACAGAGTATTCGAACGCACTTTGCCCATGAAAGGTTAAGAGATTGTA
TGGCTATTTTTGAAAATGAAAGTCCAGAACACTTGGGAAATAAAGAGGCCCTTTATCACTGGGTCAAGAAGGACAGTCAG
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGGTTGCGGATGTTCTCGTCAATGGGAAACTAGCACTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGTCAAGGATACCGTAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAACTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TTTGTTTGGGAACTGGATCTCAAAAGGAAAATTTTGAGACTCAAATATCTTCTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTCCCTATGGTCAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTGTGCAAGATTCAACTATCTGTCACTACATTCGCCAGCAGTTGTACTATCAAACGCCCTACTGGATG
AAGAAGCAGGAGGAAGCTTATCATCAAGGAGACAATCTATTAAACCATCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGGCTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(10-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

69.497

100

0.695
  coiA Streptococcus pneumoniae Rx1

69.182

100

0.692
  coiA Streptococcus pneumoniae D39

69.182

100

0.692
  coiA Streptococcus pneumoniae R6

69.182

100

0.692
  coiA Streptococcus pneumoniae TIGR4

68.868

100

0.689
  coiA Lactococcus lactis subsp. cremoris KW2

42.769

100

0.437