Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JDY60_RS04335 Genome accession   NZ_CP066172
Coordinates   899704..901506 (-) Length   600 a.a.
NCBI ID   WP_200371522.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 894704..906506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS04320 (JDY60_04320) ftsW 896569..897792 (-) 1224 WP_200371519.1 cell division peptidoglycan polymerase FtsW -
  JDY60_RS04325 (JDY60_04325) prsA 897980..898921 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  JDY60_RS04330 (JDY60_04330) - 898989..899702 (-) 714 WP_200371521.1 O-methyltransferase -
  JDY60_RS04335 (JDY60_04335) pepF 899704..901506 (-) 1803 WP_200371522.1 oligoendopeptidase F Regulator
  JDY60_RS04340 (JDY60_04340) coiA 901525..902481 (-) 957 WP_200371523.1 competence protein CoiA Machinery gene
  JDY60_RS04345 (JDY60_04345) - 902558..903706 (-) 1149 WP_200371525.1 DUF1887 family protein -
  JDY60_RS04350 (JDY60_04350) tehB 903884..904744 (-) 861 WP_200371527.1 SAM-dependent methyltransferase TehB -
  JDY60_RS04355 (JDY60_04355) smpB 904759..905226 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69796.75 Da        Isoelectric Point: 4.6225

>NTDB_id=518044 JDY60_RS04335 WP_200371522.1 899704..901506(-) (pepF) [Streptococcus oralis strain SF100]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLESADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTRESKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLNLRSKILGISDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=518044 JDY60_RS04335 WP_200371522.1 899704..901506(-) (pepF) [Streptococcus oralis strain SF100]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCAACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGACATCTCTTGGAAAGCGCAGATAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAATCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAACACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGCGCTGCTAGTGAAACTTTTGCTATTTTGGACAACGCGGATATTAGCTTCCCATATGTCCTTGATGA
CGAAGGCAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGAGGTG
CCTATGAAGCCCTCTATGCGACTTACGAGCAATTCCAACACACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAGAGTGTCTA
TGACAATCTAGTTGCAGCAGTTCGCAAGCACTTGCCACTCTTGCATCGATACCTTAACCTTCGTTCTAAAATCTTGGGTA
TTTCTGATCTCAAGATGTACGATGTCTACACACCGCTATCTTCAGTAGAATACAGCTTTACTTATGAGGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCGGTTTTAGGTGACGACTACTTGAGCCGTGTTAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGATAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACA
CAACCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACTAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTGGAAGACGACGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAACTCTACGCTGACTTGAACCAAGAGTACTACGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCAACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATCGACTACCTCAAGGCTGGTAAGTCAGACTATCCGCTC
AATGTCATGAGAAAAGCGGGTGTGGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668