Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   JDY60_RS02775 Genome accession   NZ_CP066172
Coordinates   581938..582786 (+) Length   282 a.a.
NCBI ID   WP_084921812.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 576938..587786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS02760 (JDY60_02760) - 578463..579191 (+) 729 WP_000133347.1 metallophosphoesterase family protein -
  JDY60_RS02765 (JDY60_02765) lepA 579270..581093 (+) 1824 WP_001047193.1 translation elongation factor 4 -
  JDY60_RS02770 (JDY60_02770) - 581234..581857 (+) 624 WP_200371273.1 hypothetical protein -
  JDY60_RS02775 (JDY60_02775) dprA/cilB/dalA 581938..582786 (+) 849 WP_084921812.1 DNA-processing protein DprA Machinery gene
  JDY60_RS02780 (JDY60_02780) topA 582904..584991 (+) 2088 WP_200371274.1 type I DNA topoisomerase -
  JDY60_RS02785 (JDY60_02785) - 585098..585457 (+) 360 WP_001220360.1 YbaN family protein -
  JDY60_RS02790 (JDY60_02790) - 585550..586182 (+) 633 WP_200371275.1 copper homeostasis protein CutC -
  JDY60_RS02795 (JDY60_02795) - 586226..586882 (+) 657 WP_200371276.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31259.76 Da        Isoelectric Point: 5.2027

>NTDB_id=518039 JDY60_RS02775 WP_084921812.1 581938..582786(+) (dprA/cilB/dalA) [Streptococcus oralis strain SF100]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAEISGCRNPAVFMERYFQIDDAQLEKEFQKFPSFSILDDC
YPWDLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQKVIQGLENELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPRANKRLQEHIGNHHLVLSEYGPGEEPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGHSDGCHHLIQEGAKLISSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=518039 JDY60_RS02775 WP_084921812.1 581938..582786(+) (dprA/cilB/dalA) [Streptococcus oralis strain SF100]
ATGAAGATCACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACAAATCAACAAATTTTAACTGTTCTTGAATA
CGACGAGACTGTAGATCAGGAGCTCTTGCTAGGTGATATTGCAGAAATATCTGGATGCCGTAATCCTGCTGTCTTTATGG
AACGCTATTTCCAGATAGATGATGCTCAGTTGGAGAAGGAGTTCCAAAAATTTCCATCCTTCTCGATTCTTGATGATTGT
TATCCTTGGGATCTGAGTGAGATTTATGATGCTCCAGTGCTCTTGTTTTATAAAGGAAATCTGGACTTGTTGAAATTTCC
AAAGGTTGCTGTTGTAGGGAGTCGTTCATGTTCTAGTCAGGGAGCAAAATCGGTTCAGAAAGTCATTCAAGGTTTGGAAA
ACGAATTAATCGTGGTCAGTGGTTTAGCCAAAGGGATTGATACGGCTGCCCATATGGCTGCACTCCAGAATGGAGGAAGA
ACAATTGCAGTGATTGGAACAGGATTGGATGTTTTTTATCCCCGAGCCAATAAACGTTTGCAGGAACACATTGGCAATCA
CCATTTGGTACTTAGCGAGTACGGACCTGGTGAAGAACCCTTGAAATTTCACTTCCCAGCTCGTAATCGCATCATTGCTG
GACTATGCCGTGGCGTTATTGTAGCAGAGGCAAGGATGCGTTCTGGTAGTCTCATCACCTGTGAGCGAGCTATGGAGGAA
GGGCGTGATGTTTTTGCCATTCCGGGAAACATTTTAGATGGCCATTCAGATGGCTGTCACCACCTGATCCAAGAGGGGGC
AAAGCTGATTTCCAGTGGTCAAGATGTGCTGGCTGAGTTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

91.844

100

0.918
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

91.489

100

0.915
  dprA/cilB/dalA Streptococcus pneumoniae D39

91.489

100

0.915
  dprA/cilB/dalA Streptococcus pneumoniae R6

91.489

100

0.915
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

91.489

100

0.915
  dprA/cilB/dalA Streptococcus mitis SK321

90.78

100

0.908
  dprA Streptococcus mutans UA159

61.071

99.291

0.606
  dprA Lactococcus lactis subsp. cremoris KW2

55

99.291

0.546