Detailed information NTG0518016

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ICJ33_RS27480
• Genome accession: NZ_CP066169
• Coordinates: 5988615..5990111 (+)
• Length: 498 a.a.
• NCBI ID: WP_198581226.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain K-Hf-L9
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5983615..5995111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ICJ33_RS27450 (ICJ33_27585)	sutA	5983762..5984088 (-)	327	WP_010207457.1	transcriptional regulator SutA	-
ICJ33_RS27455 (ICJ33_27590)	-	5984192..5984617 (-)	426	WP_010207458.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
ICJ33_RS27460 (ICJ33_27595)	-	5984829..5986166 (-)	1338	WP_010207459.1	ammonium transporter	-
ICJ33_RS27465 (ICJ33_27600)	glnK	5986201..5986539 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
ICJ33_RS27470 (ICJ33_27605)	-	5986962..5987222 (+)	261	WP_010207460.1	accessory factor UbiK family protein	-
ICJ33_RS27475 (ICJ33_27610)	-	5987249..5988520 (+)	1272	WP_198581225.1	MFS transporter	-
ICJ33_RS27480 (ICJ33_27615)	comM	5988615..5990111 (+)	1497	WP_198581226.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
ICJ33_RS27485 (ICJ33_27620)	-	5990108..5990692 (-)	585	WP_010207463.1	TetR family transcriptional regulator C-terminal domain-containing protein	-
ICJ33_RS27490 (ICJ33_27625)	-	5990804..5991718 (+)	915	WP_176331943.1	ABC transporter six-transmembrane domain-containing protein	-
ICJ33_RS27495 (ICJ33_27630)	-	5991722..5993698 (-)	1977	WP_010207466.1	methyl-accepting chemotaxis protein	-
ICJ33_RS27500 (ICJ33_27635)	-	5993876..5994796 (-)	921	WP_010207468.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 53403.53 Da
• Isoelectric Point: 8.0512

>NTDB_id=518016 ICJ33_RS27480 WP_198581226.1 5988615..5990111(+) (comM) [Pseudomonas simiae strain K-Hf-L9]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPASMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVLAVDHL
LQVVAHLNGHQPIEPYQSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSVAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQA
GDNTAEASARVAQARDRQQQRQGCANAFLDLPELRKHCKLAKVDECWLENACERLTLSLRAAHRLLKVARTLADLEHTDS
INRAHLAEALQYRPAAVG

Nucleotide

• Length: 1497 bp

>NTDB_id=518016 ICJ33_RS27480 WP_198581226.1 5988615..5990111(+) (comM) [Pseudomonas simiae strain K-Hf-L9]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAAATTGGCGTCGAAGCTCCCGCCGTCACCGTCGAGGTGCACATGGCCAA
TGGTCTGCCGTCCCTGACACTGGTGGGTTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCTGCCCTGCAATACCCGGCCCGCCGCATCACCCTGAACCTGGCGCCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCTTGGGAATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTCGATGCTCGATGAGGTGGAATGCCT
GGGAGAATTGGCCCTGTCCGGCGAAGTGCGGGCAGTGAAAGGCGTGTTGCCGGCAGCATTGGCGGCGCGCAAGGCGGGGC
GCACCGTAATCGTGCCGCGGGCGAATGCGGAAGAAGCCTGCCTGGCGTCGGGGTTGAAAGTGCTCGCCGTGGATCACTTG
CTGCAGGTGGTGGCACACCTGAACGGACATCAGCCTATCGAGCCCTACCAATCCGACGGATTGCTGTATCTGAACAAACC
TTACCCGGACCTGAGCGAGGTACAGGGCCAGCTCGCCGCCAAGCGCGCACTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTAAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGTCGCCTACCGGGTTTGTTGCCACCGCTGAGTGAG
CAGGAAGCCCTGGAAGTGGCGGCGATTCAATCGGTCGTCAGCGTGGCGCCACTCAGTCATTGGCCCCACCGACCGTTTCG
CCAGCCGCATCATTCGGCGTCGGGCCCGGCGCTGGTGGGAGGCGGGTCAAAGCCGCAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAGTTCGACCGCAAAGTATTGGAGGTGCTGCGCGAGCCACTGGAATCA
GGGCACATCGTGATTTCCCGTGCCCGCGACCGCGTGAGCTTCCCGGCCCGTTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGGTACCTCGGCGAACCCAGCGGACGTTGTCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGCTGCTGGACCGCATCGACTTGCACCTCACTGTGGCGCGAGAAACCACTGCGTTGAATCCTAGCCAGCAGGCA
GGCGATAACACAGCCGAGGCGTCGGCACGGGTCGCCCAGGCCCGTGATCGCCAACAGCAACGCCAAGGCTGTGCGAATGC
TTTCCTTGATCTGCCGGAGCTACGCAAGCACTGCAAGCTGGCGAAGGTCGACGAATGCTGGCTGGAAAACGCCTGTGAGC
GGCTGACGCTATCCCTGCGCGCAGCCCATCGGCTGCTCAAAGTGGCACGCACCCTAGCCGACCTTGAGCACACCGATAGC
ATCAACCGGGCGCATCTGGCGGAAGCGTTGCAGTATCGGCCCGCGGCTGTTGGCTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	57.172	99.398	0.568
comM	Glaesserella parasuis strain SC1401	56.088	100	0.564
comM	Vibrio cholerae strain A1552	56.364	99.398	0.56
comM	Haemophilus influenzae Rd KW20	54.8	100	0.55
comM	Legionella pneumophila str. Paris	50.806	99.598	0.506
comM	Legionella pneumophila strain ERS1305867	50.806	99.598	0.506
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.72	100	0.472