Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6N98_RS17370 Genome accession   NZ_CP066167
Coordinates   3822783..3824267 (+) Length   494 a.a.
NCBI ID   WP_198569582.1    Uniprot ID   A0A7T4R0B4
Organism   Spongiibacter nanhainus strain csc3.9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3817783..3829267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6N98_RS17340 (I6N98_17340) ureE 3818186..3818683 (-) 498 WP_198569576.1 urease accessory protein UreE -
  I6N98_RS17345 (I6N98_17345) ureC 3818988..3820691 (-) 1704 WP_198569577.1 urease subunit alpha -
  I6N98_RS17350 (I6N98_17350) - 3820688..3820996 (-) 309 WP_198569578.1 urease subunit beta -
  I6N98_RS17355 (I6N98_17355) ureA 3821007..3821309 (-) 303 WP_198569579.1 urease subunit gamma -
  I6N98_RS17360 (I6N98_17360) - 3821367..3822236 (-) 870 WP_198569580.1 urease accessory protein UreD -
  I6N98_RS17365 (I6N98_17365) - 3822466..3822720 (+) 255 WP_198569581.1 accessory factor UbiK family protein -
  I6N98_RS17370 (I6N98_17370) comM 3822783..3824267 (+) 1485 WP_198569582.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6N98_RS17375 (I6N98_17375) - 3824552..3825127 (-) 576 WP_198569583.1 hypothetical protein -
  I6N98_RS17380 (I6N98_17380) - 3825159..3827954 (-) 2796 WP_198569584.1 tandem-95 repeat protein -
  I6N98_RS17385 (I6N98_17385) - 3828229..3828450 (-) 222 WP_198569585.1 DUF6447 family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52874.79 Da        Isoelectric Point: 7.7284

>NTDB_id=517947 I6N98_RS17370 WP_198569582.1 3822783..3824267(+) (comM) [Spongiibacter nanhainus strain csc3.9]
MPLATVFSRAKLGIDAPLITVEVHLSGGLPAFNIVGLPEATVRESRDRVRSAIVNSRFEFPVSRITVNLAPADLPKEGGR
FDLPIAIGILLASGQIPAKSTEGYEFIGELGLSGELRPVSAALPGAVEAGEANRIMVLPKGNGGLGSLLPPEQVREARSL
IDVAQYLHGQQDLPLGSDASDTHRTAALPDLIDVKGQTAAKRALEIAAAGAHSMLMSGPPGTGKTLLASRLPGIMPPLTH
AETLDIAKIQSVLGQALDLRRPFRSPHHSASGPALVGGGSPPRPGEISKGDLGVVFLDELPQFSRHVLEVLREPLESGEV
IIARATQQVRYPCRFQLIAAMNPCPCGYDGDPTRDCKCTPDQIQRYRSKISGPLLDRIDIRITVPRMSSQELLNAPNGET
SATVQQRVAQARQIQLDRAGKANAQLSAREIDHHCPLDEACRALITKAEQQLQLSGRAQHRIIKLARTIADLAGALSITP
VHIQEALMYRGVEF

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=517947 I6N98_RS17370 WP_198569582.1 3822783..3824267(+) (comM) [Spongiibacter nanhainus strain csc3.9]
ATGCCCCTGGCCACCGTTTTCAGCCGCGCCAAGCTCGGCATCGACGCACCGCTAATCACTGTTGAAGTCCACCTTTCTGG
CGGGCTGCCCGCTTTCAATATCGTTGGCTTGCCCGAGGCCACCGTCAGGGAAAGCCGAGATCGGGTCCGCTCCGCTATTG
TCAATTCCCGCTTTGAATTCCCGGTCAGCCGCATCACGGTGAACCTCGCCCCCGCCGATCTACCCAAAGAGGGCGGCCGC
TTCGACCTCCCCATCGCCATTGGTATTCTGCTGGCGTCCGGACAAATTCCGGCGAAGAGCACTGAAGGCTACGAATTTAT
CGGTGAGCTGGGCTTGAGTGGTGAGCTGCGCCCTGTGAGCGCCGCCTTGCCCGGTGCCGTTGAGGCCGGCGAAGCGAATC
GCATTATGGTGCTACCCAAAGGCAATGGTGGACTGGGCAGCTTGCTGCCTCCAGAGCAAGTGCGGGAAGCCCGCAGCCTG
ATTGATGTGGCCCAGTACCTCCACGGCCAGCAGGACCTACCACTGGGTAGCGATGCCAGCGACACGCATCGCACTGCGGC
GCTGCCCGATCTTATCGACGTTAAAGGGCAAACCGCCGCTAAGCGGGCATTGGAAATCGCCGCCGCCGGTGCCCATAGCA
TGTTGATGAGCGGGCCACCCGGCACCGGCAAGACCCTGCTAGCAAGCCGCCTGCCCGGCATTATGCCGCCGCTCACCCAC
GCCGAAACCCTGGACATCGCCAAGATTCAATCGGTGCTGGGGCAGGCGCTGGACTTGCGGCGCCCCTTTCGCAGTCCTCA
CCACTCTGCGTCAGGGCCCGCACTAGTCGGCGGCGGCAGCCCACCTCGCCCCGGTGAGATTTCCAAGGGAGATTTGGGTG
TGGTGTTTCTCGATGAATTGCCCCAGTTCTCCCGCCACGTTTTAGAAGTGCTGCGAGAGCCACTGGAGAGCGGTGAAGTG
ATCATTGCCCGGGCCACCCAGCAAGTGCGCTATCCCTGCCGCTTTCAGCTGATCGCCGCCATGAACCCCTGCCCCTGCGG
CTACGACGGCGACCCCACCCGGGACTGCAAGTGCACGCCGGACCAGATTCAGCGTTATCGCAGCAAAATCTCCGGCCCGC
TGCTAGACCGCATCGATATCCGTATTACCGTGCCGCGCATGAGCAGCCAGGAGTTGCTGAATGCACCGAATGGCGAGACC
AGCGCCACCGTTCAGCAACGCGTGGCCCAAGCCCGGCAAATTCAACTGGACCGAGCCGGCAAAGCCAACGCTCAGTTAAG
CGCCCGCGAGATCGACCATCACTGCCCACTCGACGAGGCATGCCGGGCCTTGATCACCAAAGCCGAACAGCAGTTACAAC
TCAGCGGCCGCGCCCAGCACCGCATTATTAAACTGGCGAGAACCATCGCCGATTTGGCCGGGGCCCTGTCGATAACGCCA
GTGCATATTCAAGAAGCGTTGATGTATCGCGGGGTGGAGTTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(398-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4R0B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

100

0.54
  comM Vibrio campbellii strain DS40M4

51.904

100

0.524
  comM Haemophilus influenzae Rd KW20

51.195

100

0.52
  comM Glaesserella parasuis strain SC1401

49.702

100

0.506
  comM Legionella pneumophila str. Paris

47.4

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.4

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.773

100

0.46