Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ITG10_RS09845 Genome accession   NZ_CP066149
Coordinates   2161627..2162181 (+) Length   184 a.a.
NCBI ID   WP_017630755.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2156627..2167181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS09830 (ITG10_09750) uvrA 2156690..2159521 (-) 2832 WP_017630758.1 excinuclease ABC subunit UvrA -
  ITG10_RS09835 (ITG10_09755) galU 2159671..2160543 (-) 873 WP_017630757.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ITG10_RS09840 (ITG10_09760) qstR 2160701..2161348 (-) 648 WP_248386374.1 LuxR C-terminal-related transcriptional regulator Regulator
  ITG10_RS09845 (ITG10_09765) ssb 2161627..2162181 (+) 555 WP_017630755.1 single-stranded DNA-binding protein Machinery gene
  ITG10_RS09850 (ITG10_09770) csrD 2162343..2164358 (+) 2016 WP_026084233.1 RNase E specificity factor CsrD -
  ITG10_RS09855 (ITG10_09775) - 2164361..2165803 (+) 1443 WP_017630753.1 hypothetical protein -
  ITG10_RS09860 (ITG10_09780) pilO 2165803..2166450 (+) 648 WP_017630752.1 type 4a pilus biogenesis protein PilO -
  ITG10_RS09865 (ITG10_09785) - 2166443..2166775 (+) 333 WP_017630751.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20303.40 Da        Isoelectric Point: 5.2358

>NTDB_id=517886 ITG10_RS09845 WP_017630755.1 2161627..2162181(+) (ssb) [Vibrio sp. ED004]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQYSAPAQQQKAPQ
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=517886 ITG10_RS09845 WP_017630755.1 2161627..2162181(+) (ssb) [Vibrio sp. ED004]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGCGCGGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCATCGTGTTGCTCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAACCGCAACAGCCACAACAGCAGCAACAATACAGTGCTCCTGCTCAACAACAGAAAGCACCTCAA
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.622

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.576
  ssb Neisseria meningitidis MC58

46.961

98.37

0.462
  ssb Neisseria gonorrhoeae MS11

46.961

98.37

0.462